(original) (raw)
Package
Maintainer
Title
Xuejun Arthur Li
Affymetrix Quality Assessment and Analysis Tool
Denise Scholtens
Estimate protein complex membership using AP-MS protein data
Agnes Paquet
Assessing array quality on spotted arrays
Arthur Li
geneChip Analysis Package
Elizabeth Whalen
Model-View-Controller (MVC) Classes That Use Biobase
Ligia Bras
Analysis of cell-based screens
Florian Hahne
Analysis of cell-based screens - revised version of cellHTS
Sjoerd Vosse
Calling aberrations for array CGH tumor profiles.
Sjoerd Vosse
Dimension Reduction for Array CGH Data with Minimal Information Loss.
James W. MacDonald
Functions to perform cancer outlier profile analysis.
Antoine Lucas
Cluster and Tree Conversion.
Gregoire Pau
Image processing toolbox for R
Laurent
Meta-data and tools for E. coli
Crispin Miller
High level analysis of Affymetrix exon array data
Michael Lawrence
GUI for exploratory data analysis of systems biology data
Raphael Gottardo
Clustering for Flow Cytometry
Florian Hahne
Visualization for flow cytometry
Dan Tenenbaum
Broadcast data between R and other bioinformatics programs
Biocore Team c/o BioC user list
Graphics related functions for Bioconductor
Lasse Folkersen
GeneRegionScan
Steffen Durinck
Plotting genomic information from Ensembl
Agnes Paquet
Functions for Gene Ontology database
Alexander Ploner
A heat map displaying covariates and coloring clusters
Reid F. Thompson
Tools for HELP data analysis
Nicholas Lewin-Koh
Hexagonal Binning Routines
Simon Anders
Hilbert curve visualization
Simon Anders
HilbertVisGUI
Karl J. Dykema
idiogram
Jorma de Ronde
Multi sample aCGH analysis package using kernel convolution
Joern Toedling
MicroArray Chromosome Analysis Tool
Alexander Ploner
Visualize artificial correlation in microarray data
Johannes Rainer
Microarray database and utility functions for microarray data analysis.
Xiaogang Zhong
Merge Maid
Matthias Futschik
Soft clustering of time series gene expression data
Elizabeth Whalen
Model-View-Controller (MVC) Classes
Matthias Futschik
Optimized local intensity-dependent normalisation of two-color microarrays
Matthias Futschik
Graphical user interface for OLIN
Florian Hahne
Data analysis for cell-based functional assays
Jan Oosting
Quantile smoothing and genomic visualization of array data
Karl J. Dykema
Regional Expression Biases
Nora Rieber
Statistical analysis of high-throughput RNAi screens
Michael Lawrence
R interface to genome browsers and their annotation tracks
Maarten van Iterson
Integrated Analysis of gene expression and copynumber data
Crispin Miller
Very simple high level analysis of Affymetrix data
Robert Scharpf
Classes and Methods for high throughput SNP chip data
Zhenyu Xu
Transcript mapping with high-density oligonucleotide tiling arrays
Adrian Alexa
topGO: Enrichment analysis for Gene Ontology
Robert Scharpf
A Hidden Markov Model for high throughput genotyping arrays
Tim Yates
Export plotting files to the xmapBridge for visualisation in X:Map