DDPNA: Disease-Drived Differential Proteins Co-Expression Network Analysis (original) (raw)
Functions designed to connect disease-related differential proteins and co-expression network. It provides the basic statics analysis included t test, ANOVA analysis. The network construction is not offered by the package, you can used 'WGCNA' package which you can learn in Peter et al. (2008) <doi:10.1186/1471-2105-9-559>. It also provides module analysis included PCA analysis, two enrichment analysis, Planner maximally filtered graph extraction and hub analysis.
| Version: | 0.3.3 |
|---|---|
| Depends: | R (≥ 3.5) |
| Imports: | stats, ggplot2, ggalt, MEGENA, igraph, Hmisc, utils, grDevices, plyr, scales, grid, VennDiagram |
| Suggests: | WGCNA, Biostrings, impute, ggfortify |
| Published: | 2024-03-14 |
| DOI: | 10.32614/CRAN.package.DDPNA |
| Author: | Kefu Liu [aut, cre] |
| Maintainer: | Kefu Liu <liukefu19 at 163.com> |
| BugReports: | https://github.com/liukf10/DDPNA/issues |
| License: | GPL-2 |
| URL: | https://github.com/liukf10/DDPNA |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | DDPNA results |
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