GRIN2: Genomic Random Interval (GRIN) (original) (raw)

Improved version of 'GRIN' software that streamlines its use in practice to analyze genomic lesion data, accelerate its computing, and expand its analysis capabilities to answer additional scientific questions including a rigorous evaluation of the association of genomic lesions with RNA expression. Pounds, Stan, et al. (2013) <doi:10.1093/bioinformatics/btt372>.

Version:	1.0
Depends:	R (≥ 4.2.0)
Imports:	biomaRt, circlize, ComplexHeatmap, data.table, dplyr, EnsDb.Hsapiens.v75, ensembldb, forcats, GenomeInfoDb, ggplot2, graphics, grDevices, grid, gridGraphics, Gviz, magrittr, stats, stringr, survival, tibble, tidyselect, utils, writexl
Suggests:	knitr, rmarkdown
Published:	2024-11-19
DOI:	10.32614/CRAN.package.GRIN2
Author:	Abdelrahman Elsayed [aut, cre, cph], Xueyuan Cao [aut], Lakshmi Anuhya patibandla [aut], Stanley Pounds [aut, cph]
Maintainer:	Abdelrahman Elsayed
BugReports:	https://github.com/abdel-elsayed87/GRIN2/issues
License:	GPL (≥ 3)
URL:	https://github.com/abdel-elsayed87/GRIN2
NeedsCompilation:	no
CRAN checks:	GRIN2 results

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