MARVEL: Revealing Splicing Dynamics at Single-Cell Resolution (original) (raw)

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AnnotationDbi (≥ 1.48.0), Biostrings (≥ 2.56.0), BSgenome (≥ 1.56.0), BSgenome.Hsapiens.NCBI.GRCh38 (≥ 1.3.1000), clusterProfiler (≥ 3.16.0), factoextra (≥ 1.0.7), FactoMineR (≥ 2.3), fitdistrplus (≥ 1.1-1), GenomicRanges (≥ 1.42.0), ggnewscale (≥ 0.4.5), ggrepel (≥ 0.9.1), gridExtra (≥ 2.3), gtools (≥ 3.9.2), IRanges (≥ 2.24.1), kableExtra (≥ 1.3.1), knitr (≥ 1.29), kSamples (≥ 1.2-9), markdown (≥ 1.1), MAST (≥ 1.16.0), org.Hs.eg.db (≥ 3.10.0), org.Mm.eg.db (≥ 3.11.4), parallel, pheatmap (≥ 1.0.12), reshape2 (≥ 1.4.4), rmarkdown (≥ 2.3), S4Vectors (≥ 0.26.1), stringr (≥ 1.4.0), textclean (≥ 0.9.3), twosamples (≥ 1.1.1), wiggleplotr (≥ 1.12.1)