doi:10.1186/s12859-020-3475-0>.">

PACVr: Plastome Assembly Coverage Visualization (original) (raw)

Visualizes the coverage depth of a complete plastid genome as well as the equality of its inverted repeat regions in relation to the circular, quadripartite genome structure and the location of individual genes. For more information, please see Gruenstaeudl and Jenke (2020) <doi:10.1186/s12859-020-3475-0>.

Version: 1.0.11
Depends: R (≥ 3.3.0)
Imports: Biostrings (≥ 2.48.0), dplyr, GenomicAlignments (≥ 1.18.1), GenomicRanges, IRanges, logger, read.gb (≥ 2.2), RCircos (≥ 1.2.0), grDevices, stats, utils, tidyr, R6
Suggests: testthat (≥ 3.0.0), rentrez
Published: 2024-04-10
DOI: 10.32614/CRAN.package.PACVr
Author: Gregory Smith [ctb], Nils Jenke [ctb], Michael GruenstaeudlORCID iD [aut, cre]
Maintainer: Michael Gruenstaeudl <m_gruenstaeudl at fhsu.edu>
BugReports: https://github.com/michaelgruenstaeudl/PACVr/issues
License: BSD 3-clause License + file
URL: https://github.com/michaelgruenstaeudl/PACVr
NeedsCompilation: no
Citation: PACVr citation info
CRAN checks: PACVr results

Documentation:

Downloads:

Linking:

Please use the canonical formhttps://CRAN.R-project.org/package=PACVrto link to this page.