POSTm: Phylogeny-Guided OTU-Specific Association Test for Microbiome Data (original) (raw)
Implements the Phylogeny-Guided Microbiome OTU-Specific Association Test method, which boosts the testing power by adaptively borrowing information from phylogenetically close OTUs (operational taxonomic units) of the target OTU. This method is built on a kernel machine regression framework and allows for flexible modeling of complex microbiome effects, adjustments for covariates, and can accommodate both continuous and binary outcomes.
Version: | 1.4 |
---|---|
Depends: | methods |
Imports: | CompQuadForm, ape |
Suggests: | multtest, rmarkdown, knitr |
Published: | 2024-04-17 |
DOI: | 10.32614/CRAN.package.POSTm |
Author: | Caizhi Huang [aut], Jung-Ying Tzeng [aut], Shannon T. Holloway [aut, cre] |
Maintainer: | Shannon T. Holloway <shannon.t.holloway at gmail.com> |
License: | GPL-2 |
NeedsCompilation: | no |
Materials: | |
CRAN checks: | POSTm results |
Documentation:
Downloads:
Linking:
Please use the canonical formhttps://CRAN.R-project.org/package=POSTmto link to this page.