SMITIDstruct: Data Structure and Manipulations Tool for Host and Viral Population (original) (raw)
Statistical Methods for Inferring Transmissions of Infectious Diseases from deep sequencing data (SMITID). It allow sequence-space-time host and viral population data storage, indexation and querying.
| Version: | 0.0.5 | ||
|---|---|---|---|
| Depends: | methods, utils, grDevices (≥ 3.0.0), graphics (≥ 3.0.0), R (≥ 3.3.0) | ||
| Imports: | ggplot2, sf (≥ 0.6.3), stats (≥ 3.0.2), Biostrings (≥ 2.0.0) | ||
| Suggests: | testthat (≥ 2.0) | ||
| Published: | 2019-06-14 | ||
| DOI: | 10.32614/CRAN.package.SMITIDstruct | ||
| Author: | Jean-Francois Rey [aut, cre] | ||
| Maintainer: | Jean-Francois Rey <jean-francois.rey at inra.fr> | ||
| BugReports: | https://gitlab.paca.inra.fr/SMITID/structR/issues | ||
| License: | GPL-2 | GPL-3 | file [expanded from: GPL (≥ 2) | file LICENSE] |
| URL: | https://informatique-mia.inra.fr/biosp/anr-smitid-project,https://gitlab.paca.inra.fr/SMITID/structR | ||
| NeedsCompilation: | no | ||
| CRAN checks: | SMITIDstruct results |
Documentation:
Downloads:
Reverse dependencies:
Linking:
Please use the canonical formhttps://CRAN.R-project.org/package=SMITIDstructto link to this page.