SeuratExplorer: An 'Shiny' App for Exploring scRNA-seq Data Processed in 'Seurat' (original) (raw)
A simple, one-command package which runs an interactive dashboard capable of common visualizations for single cell RNA-seq. 'SeuratExplorer' requires a processed 'Seurat' object, which is saved as 'rds' or 'qs2' file.
| Version: | 0.1.0 |
|---|---|
| Depends: | R (≥ 4.1.0) |
| Imports: | ggplot2, utils, Seurat, shiny, shinydashboard, DT, shinycssloaders, patchwork, tools, colourpicker, shinyWidgets, scales, SeuratObject, shinyjqui, shinyBS, ggalluvial, dplyr, ComplexHeatmap, qs2, circlize, reshape2, stats, htmltools |
| Suggests: | BiocManager, DESeq2, MAST, roxygen2, devtools |
| Published: | 2025-03-13 |
| DOI: | 10.32614/CRAN.package.SeuratExplorer |
| Author: | Yongchao Zhang [aut, cre] (https://github.com/fentouxungui) |
| Maintainer: | Yongchao Zhang |
| License: | GPL (≥ 3) |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | SeuratExplorer results |
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