WayFindR: Computing Graph Structures on WikiPathways (original) (raw)

Converts pathways from 'WikiPathways' GPML format or 'KEGG' KGML format into 'igraph' objects. Includes tools to find all cycles in the resulting graphs and determine which ones involve negative feedback (inhibition).

Version: 0.3.1
Depends: R (≥ 3.5)
Imports: graphics, utils, XML, igraph, KEGGREST, PubChemR (≥ 2.0), AnnotationDbi, org.Hs.eg.db, DescTools, Rgraphviz
Suggests: knitr, rmarkdown, Polychrome
Published: 2025-04-09
DOI: 10.32614/CRAN.package.WayFindR
Author: Kevin R. Coombes [aut, cre], Polina Bombina [aut]
Maintainer: Kevin R. Coombes
License: Artistic-2.0
URL: http://oompa.r-forge.r-project.org/
NeedsCompilation: no
CRAN checks: WayFindR results

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