WayFindR: Computing Graph Structures on WikiPathways (original) (raw)
Converts pathways from 'WikiPathways' GPML format or 'KEGG' KGML format into 'igraph' objects. Includes tools to find all cycles in the resulting graphs and determine which ones involve negative feedback (inhibition).
| Version: | 0.3.1 |
|---|---|
| Depends: | R (≥ 3.5) |
| Imports: | graphics, utils, XML, igraph, KEGGREST, PubChemR (≥ 2.0), AnnotationDbi, org.Hs.eg.db, DescTools, Rgraphviz |
| Suggests: | knitr, rmarkdown, Polychrome |
| Published: | 2025-04-09 |
| DOI: | 10.32614/CRAN.package.WayFindR |
| Author: | Kevin R. Coombes [aut, cre], Polina Bombina [aut] |
| Maintainer: | Kevin R. Coombes |
| License: | Artistic-2.0 |
| URL: | http://oompa.r-forge.r-project.org/ |
| NeedsCompilation: | no |
| CRAN checks: | WayFindR results |
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