causalBatch: Causal Batch Effects (original) (raw)
Software which provides numerous functionalities for detecting and removing group-level effects from high-dimensional scientific data which, when combined with additional assumptions, allow for causal conclusions, as-described in our manuscripts Bridgeford et al. (2024) <doi:10.1101/2021.09.03.458920> and Bridgeford et al. (2023) <doi:10.48550/arXiv.2307.13868>. Also provides a number of useful utilities for generating simulations and balancing covariates across multiple groups/batches of data via matching and propensity trimming for more than two groups.
| Version: | 1.3.0 |
|---|---|
| Depends: | R (≥ 4.2.0) |
| Imports: | cdcsis, sva, MatchIt, nnet, dplyr, magrittr, genefilter, BiocParallel, utils |
| Suggests: | tidyr, ggpubr, knitr, rmarkdown, parallel, testthat (≥ 3.0.0), covr, roxygen2, ks, ggplot2 |
| Published: | 2025-01-07 |
| DOI: | 10.32614/CRAN.package.causalBatch |
| Author: | Eric W. Bridgeford [aut, cre], Michael Powell [ctb], Brian Caffo [ctb], Joshua T. Vogelstein [ctb] |
| Maintainer: | Eric W. Bridgeford |
| License: | GPL-3 |
| URL: | https://github.com/neurodata/causal_batch |
| NeedsCompilation: | no |
| Citation: | causalBatch citation info |
| CRAN checks: | causalBatch results [issues need fixing before 2025-05-15] |
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