genBaRcode: Analysis and Visualization Tools for Genetic Barcode Data (original) (raw)
Provides the necessary functions to identify and extract a selection of already available barcode constructs (Cornils, K. et al. (2014) <doi:10.1093/nar/gku081>) and freely choosable barcode designs from next generation sequence (NGS) data. Furthermore, it offers the possibility to account for sequence errors, the calculation of barcode similarities and provides a variety of visualisation tools (Thielecke, L. et al. (2017) <doi:10.1038/srep43249>).
Version: | 1.2.8 | |
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Depends: | R (≥ 3.4) | |
Imports: | methods, RColorBrewer, ape, ggnetwork, ggplot2, ggraph, igraph, network, phangorn, stringdist, visNetwork, reshape2, S4Vectors, shiny, ggtree, dplyr, VennDiagram, futile.logger, future, future.apply, tools, ShortRead, Biostrings | |
Suggests: | BiocManager, testthat, knitr, rmarkdown | |
Published: | 2025-03-10 | |
DOI: | 10.32614/CRAN.package.genBaRcode | |
Author: | Lars Thielecke [aut, cre] | |
Maintainer: | Lars Thielecke <lars.thielecke at tu-dresden.de> | |
License: | LGPL-2 | LGPL-2.1 | LGPL-3 [expanded from: LGPL] |
NeedsCompilation: | no | |
CRAN checks: | genBaRcode results |
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