ggpicrust2: Make 'PICRUSt2' Output Analysis and Visualization Easier (original) (raw)
Provides a convenient way to analyze and visualize 'PICRUSt2' output with pre-defined plots and functions. Allows for generating statistical plots about microbiome functional predictions and offers customization options. Features a one-click option for creating publication-level plots, saving time and effort in producing professional-grade figures. Streamlines the 'PICRUSt2' analysis and visualization process. For more details, see Yang et al. (2023) <doi:10.1093/bioinformatics/btad470>.
| Version: | 2.1.2 |
|---|---|
| Depends: | R (≥ 3.5.0) |
| Imports: | aplot, dplyr, ggplot2, grid, ggh4x, readr, tibble, tidyr, ggprism, patchwork, ggplotify, magrittr, progress, stats, methods, grDevices, tidygraph, ggraph, utils |
| Suggests: | Biobase, KEGGREST, ComplexHeatmap, BiocGenerics, knitr, rmarkdown, testthat (≥ 3.0.0), ALDEx2, DESeq2, edgeR, GGally, limma, Maaslin2, metagenomeSeq, MicrobiomeStat, SummarizedExperiment, circlize, lefser, fgsea, clusterProfiler, enrichplot, DOSE, pathview, ggVennDiagram, UpSetR, igraph |
| Published: | 2025-04-13 |
| DOI: | 10.32614/CRAN.package.ggpicrust2 |
| Author: | Chen Yang [aut, cre], Liangliang Zhang [aut] |
| Maintainer: | Chen Yang |
| BugReports: | https://github.com/cafferychen777/ggpicrust2/issues |
| License: | MIT + file |
| URL: | https://github.com/cafferychen777/ggpicrust2,https://cafferyang.com/ggpicrust2/ |
| NeedsCompilation: | no |
| Materials: | README NEWS |
| CRAN checks: | ggpicrust2 results |
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