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hahmmr: Haplotype-Aware Hidden Markov Model for RNA (original) (raw)

Haplotype-aware Hidden Markov Model for RNA (HaHMMR) is a method for detecting copy number variations (CNVs) from bulk RNA-seq data. Additional examples, documentations, and details on the method are available at <https://github.com/kharchenkolab/hahmmr/>.

Version: 1.0.0
Depends: R (≥ 4.1.0)
Imports: data.table, dplyr, GenomicRanges, ggplot2, glue, IRanges, methods, patchwork, Rcpp, stringr, tibble, zoo
LinkingTo: Rcpp, RcppArmadillo, roptim
Suggests: ggrastr, testthat
Published: 2023-10-25
DOI: 10.32614/CRAN.package.hahmmr
Author: Teng Gao ORCID iD [aut, cre], Evan Biederstedt [aut], Peter Kharchenko [aut]
Maintainer: Teng Gao
License: MIT + file
NeedsCompilation: yes
Materials: README
CRAN checks: hahmmr results

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