doi:10.1093/bioinformatics/bty191> "Minimap2: pairwise alignment for nucleotide sequences".">

minimapR: Wrapper for 'minimap2' (original) (raw)

Wrapper for 'Minimap2'. 'Minimap2' is a very valuable long read aligner for the Pacbio and Oxford Nanopore Technologies sequencing platforms. 'minimapR' is an R wrapper for 'minimap2' which was developed by Heng Li me@liheng.org. *SPECIAL NOTES 1. Examples can only be run from 'GitHub' installation. 2. 'conda' or 'mamba' must be used to install 'minimapR' on your system. 3. For Windows users, 'minimap2' and 'samtools' can be installed via MSYS2, instructions are provided when 'minimap2_installation()' is run. Li, Heng (2018) <doi:10.1093/bioinformatics/bty191> "Minimap2: pairwise alignment for nucleotide sequences".

Version: 0.0.1.3
Depends: R (≥ 4.4.0), Rsamtools, pafr
Suggests: knitr, rmarkdown
Published: 2025-04-09
DOI: 10.32614/CRAN.package.minimapR
Author: Jake Reed ORCID iD [aut, cre], Pradyun Pulipaka [ctb]
Maintainer: Jake Reed <hreed.ga at gmail.com>
License: MIT + file
URL: https://github.com/jake-bioinfo/minimapR
NeedsCompilation: no
Materials: README
CRAN checks: minimapR results

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