noisyr: Noise Quantification in High Throughput Sequencing Output (original) (raw)
Quantifies and removes technical noise from high-throughput sequencing data. Two approaches are used, one based on the count matrix, and one using the alignment BAM files directly. Contains several options for every step of the process, as well as tools to quality check and assess the stability of output.
| Version: | 1.0.0 |
|---|---|
| Depends: | R (≥ 3.1.2) |
| Imports: | utils, grDevices, tibble, dplyr, magrittr, ggplot2, preprocessCore, IRanges, GenomicRanges, Rsamtools, philentropy, doParallel, foreach |
| Suggests: | testthat, roxygen2, knitr, rmarkdown |
| Published: | 2021-04-16 |
| DOI: | 10.32614/CRAN.package.noisyr |
| Author: | Ilias Moutsopoulos [aut, cre], Irina Mohorianu [aut, ctb], Hajk-Georg Drost [ctb], Elze Lauzikaite [ctb] |
| Maintainer: | Ilias Moutsopoulos |
| BugReports: | https://github.com/Core-Bioinformatics/noisyR/issues |
| License: | GPL-2 |
| URL: | https://github.com/Core-Bioinformatics/noisyR |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | noisyr results |
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