pcgen: Reconstruction of Causal Networks for Data with Random Genetic Effects (original) (raw)
Implements the pcgen algorithm, which is a modified version of the standard pc-algorithm, with specific conditional independence tests and modified orientation rules. pcgen extends the approach of Valente et al. (2010) <doi:10.1534/genetics.109.112979> with reconstruction of direct genetic effects.
| Version: | 0.2.0 |
|---|---|
| Depends: | R (≥ 3.1.0) |
| Imports: | pcalg, graph, Matrix, stats, MASS, utils, Hmisc, methods, lme4, sommer, ggm |
| Published: | 2019-02-18 |
| DOI: | 10.32614/CRAN.package.pcgen |
| Author: | Willem Kruijer, Pariya Behrouzi, Maria Xose Rodriguez-Alvarez |
| Maintainer: | Pariya Behrouzi <pariya.behrouzi at gmail.com> |
| License: | GPL-3 |
| NeedsCompilation: | no |
| CRAN checks: | pcgen results |
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