pctax: Professional Comprehensive Omics Data Analysis (original) (raw)

Provides a comprehensive suite of tools for analyzing omics data. It includes functionalities for alpha diversity analysis, beta diversity analysis, differential abundance analysis, community assembly analysis, visualization of phylogenetic tree, and functional enrichment analysis. With a progressive approach, the package offers a range of analysis methods to explore and understand the complex communities. It is designed to support researchers and practitioners in conducting in-depth and professional omics data analysis.

Version:	0.1.3
Depends:	R (≥ 4.2.0)
Imports:	pcutils (≥ 0.2.5), dplyr, ggplot2 (≥ 3.2.0), vegan, magrittr, grDevices, RColorBrewer, ggrepel, reshape2, stats, tibble, utils, ggpubr, ggnewscale, ade4, scales
Suggests:	picante, httr, NST, permute, aplot, pheatmap, MASS, Rtsne, mixOmics, geosphere, phyloseq, phyloseqGraphTest, plotly, umap, Hmisc, minpack.lm, bbmle, snow, foreach, doSNOW, patchwork, tidytree, ggtree, ggtreeExtra, vctrs, zoo, ape, DESeq2, limma, ALDEx2, Mfuzz, edgeR, methods, randomForest, knitr, rmarkdown, MetaNet, showtext, jsonlite, prettydoc, readxl, clipr, zetadiv, ggforce
Published:	2024-12-02
DOI:	10.32614/CRAN.package.pctax
Author:	Chen Peng [aut, cre]
Maintainer:	Chen Peng
BugReports:	https://github.com/Asa12138/pctax/issues
License:	GPL-3
URL:	https://github.com/Asa12138/pctax
NeedsCompilation:	no
Citation:	pctax citation info
Materials:	README NEWS
CRAN checks:	pctax results

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