seqmagick: Sequence Manipulation Utilities (original) (raw)

Supports reading and writing sequences for different formats (currently interleaved and sequential formats for 'FASTA' and 'PHYLIP'), file conversion, and manipulation (e.g. filter sequences that contain specify pattern, export consensus sequence from an alignment).

Version: 0.1.7
Depends: R (≥ 3.6.0)
Imports: Biostrings, magrittr, stats, utils, yulab.utils (> 0.1.1)
Suggests: downloader, knitr, rmarkdown, GenomicAlignments, GenomicRanges, IRanges, muscle, Rsamtools, prettydoc
Published: 2024-01-09
DOI: 10.32614/CRAN.package.seqmagick
Author: Guangchuang Yu ORCID iD [aut, cre]
Maintainer: Guangchuang Yu
BugReports: https://github.com/YuLab-SMU/seqmagick/issues
License: Artistic-2.0
URL: https://github.com/YuLab-SMU/seqmagick
NeedsCompilation: no
Materials: NEWS
CRAN checks: seqmagick results

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