valr: Genome Interval Arithmetic (original) (raw)
Read and manipulate genome intervals and signals. Provides functionality similar to command-line tool suites within R, enabling interactive analysis and visualization of genome-scale data. Riemondy et al. (2017) <doi:10.12688/f1000research.11997.1>.
Version:
0.8.3
Depends:
R (≥ 4.0.0)
Imports:
broom, cli, cpp11bigwig, dplyr (≥ 0.8.0), ggplot2, lifecycle, Rcpp (≥ 1.0.0), readr, rlang, stringr, tibble (≥ 1.4.2)
LinkingTo:
Rcpp (≥ 1.0.0)
Suggests:
bench, covr, cowplot, curl, DBI, dbplyr, devtools, DT, GenomicRanges, IRanges, knitr, purrr, RMariaDB, rmarkdown, S4Vectors, testthat (≥ 3.0.0), vdiffr (≥ 1.0.0), tidyr
Published:
2025-01-11
DOI:
Author:
Jay Hesselberth 
[aut], Kent Riemondy [aut, cre], RNA Bioscience Initiative [fnd, cph]
Maintainer:
Kent Riemondy <kent.riemondy at gmail.com>
BugReports:
https://github.com/rnabioco/valr/issues
License:
MIT + file
URL:
https://github.com/rnabioco/valr/,https://rnabioco.github.io/valr/
NeedsCompilation:
yes
Citation:
Materials:
In views:
CRAN checks: