RDP Staff (original) (raw)

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1. RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s
   Java 61 30
2. Collection of commonly used RDP Tools for easy building
   Makefile 52 53
3. Scripts and resources for analyzing sequence data for select eco-functional genes
   Python 20 12
4. A gene-targeted assembler tool
   Shell 19 4
5. primer design pipeline
   Java 8 4
6. Dynamic programming based frame shift detection and correction tool with nearest neighbor classification.
   Java 7 7

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Showing 10 of 20 repositories

• RDPTools Public
  Collection of commonly used RDP Tools for easy building
  rdpstaff/RDPTools’s past year of commit activity
  Makefile
  52 53 24 0
  Updated Jun 8, 2023
• classifier Public
  RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s
  rdpstaff/classifier’s past year of commit activity
  Java
  61
  GPL-2.0
  30 22 1
  Updated Dec 21, 2022
• gfclassify Public
  Gene Family Classifier allows for fast and accurate classification of amplicon (or open reading frame) nucleotide sequences.
  rdpstaff/gfclassify’s past year of commit activity
  Python
  2
  GPL-3.0 0
  0 0
  Updated Jul 29, 2022
• rdpstaff/Xander-HMMgs’s past year of commit activity
  Java 0 GPL-3.0
  2 0 0
  Updated Dec 29, 2020
• TaxonomyTree Public
  TaxonomyTree building and traversal utility classes.
  rdpstaff/TaxonomyTree’s past year of commit activity
  Java
  3
  GPL-3.0
  2 0 0
  Updated Dec 29, 2020
• rdpstaff/SequenceMatch’s past year of commit activity
  Java
  1
  GPL-3.0
  2 0 1
  Updated Dec 29, 2020
• SeqFilters Public
  Java filtering framework for sequence data
  rdpstaff/SeqFilters’s past year of commit activity
  Java 0 GPL-3.0
  2 0 0
  Updated Dec 29, 2020
• ReadSeq Public
  Java based common sequence file format reader and sequence file manipulation. Most RDP projects require this package.
  rdpstaff/ReadSeq’s past year of commit activity
  Java
  1
  GPL-3.0
  7 2 1
  Updated Dec 29, 2020
• ProbeMatch Public
  Tools for finding (and removing) DNA/RNA primers in sequence reads.
  rdpstaff/ProbeMatch’s past year of commit activity
  Java
  1
  GPL-3.0
  3 0 0
  Updated Dec 29, 2020
• rdpstaff/KmerFilter’s past year of commit activity
  Java 0 GPL-3.0
  1 1 0
  Updated Dec 29, 2020