LinkedOmics :: Data Download (original) (raw)
Clinical
Clinical annotation
Clinical
Phenotype
591
9
tsi
Glycoproteome (Site level)
Glycoproteome at site level data given in log-ratio
glycosite
Expression (CDAP, Log2ratio)
122
1219
cct
Glycoproteome (Gene level)
Glycoproteome at Gene level data given in log-ratio
glycogene
Expression (CDAP, Log2ratio)
122
516
cct
Methylation (CpG-site level, HM27)
Methylation data for tumor samples at Site level (Illumina HM27 platform, Beta values)
CpG
Beta Values (Val-0.5)
582
25617
cct
Methylation (Gene level, HM27)
Methylation data of tumor samples at Gene level (Illumina HM27 platform, Beta values)
gene
Beta Values (Val-0.5)
582
13772
cct
Methylation (CpG-site level, HM450K)
Methylation data of tumor samples at CpG-site level (Illumina HM450K platform, Beta values)
CpG
Beta Values (Val-0.5)
10
337082
cct
Methylation (Gene level, HM450K)
Methylation data of tumor samples at Gene level Illumina HM450K platform, Beta values)
gene
Beta Values (Val-0.5)
10
20120
cct
miRNA (miRgene level)
miRNA expression for tumor samples (miRgene-level, Normalized, RPM)
miRgene
Expression (RPM, Log2(Val+1))
453
588
cct
Mutation (Gene level)
Somatic mutations at gene level SNVs
gene
Mutation Status (MutSig2CV)
465
2205
cbt
Mutation (Site level)
Somatic mutations at site level SNVs
mutationsite
Mutation Status (MutSig2CV)
465
29
cbt
Phosphoproteome (Site level)
Phosphoproteome at site level data given in log-ratio (normalized)
phosphosite
Expression (CDAP, Log2ratio)
69
4119
cct
Phosphoproteome (Gene level)
Phosphoproteome at Gene level data given in log-ratio (normalized)
phosphogene
Expression (CDAP, Log2ratio)
69
2059
cct
Proteome (JHU, Gene level)
Proteome data for tumor samples log-ratio normalized (from Johns Hopkins University, Gene-level)
gene
Expression (CDAP, Log2ratio)
122
7625
cct
Proteome (PNNL, Gene level)
Proteome data for tumor samples log-ratio normalized (Gene-level)
gene
Expression (CDAP, Log2ratio)
84
6475
cct
RPPA (Analyte level)
Reverse phase protein array (RPPA) expression normalized (Analyte-level)
analyte
Expression (Signal)
425
193
cct
RPPA (Gene level)
Reverse phase protein array (RPPA) expression normalized (Gene-level)
gene
Expression (Signal)
425
159
cct
RNAseq (GA, Gene level)
RNAseq data normalized counts (Illumina GenomeAnalyzer platform, Gene-level, RPKM)
gene
Expression (RSEM, Log2(Val+1))
569
6426
cct
RNAseq (HiSeq, Gene level)
RNAseq data normalized counts (Illumina HiSeq platform, Gene-level, RPKM)
gene
Expression (RSEM, Log2(Val+1))
303
20032
cct
SCNV (Focal level, log-ratio)
Copy number change at the focal level, GISTIC2 log ratio
focal
Copy Number Change (GISTIC2, Log2ratio)
579
72
cct
SCNV (Focal level, Thresholded)
Copy number change at the focal level, GISTIC2 thresholded
focal
Copy Number Change (GISTIC2, Log2ratio)
579
33
cgt
SCNV (Gene level, log-ratio)
Copy number change at the gene level, GISTIC2 log ratio format
gene
Copy Number Change (GISTIC2, Log2ratio)
579
24776
cct
SCNV (Gene level, Thresholded)
Copy number change at the gene level, GISTIC2 thresholded
gene
Copy Number Change (GISTIC2, Log2ratio)
579
24776
cgt