Magnesium in PDB 6m31: Structural and Functional Insights Into An Archaeal Synthase (original) (raw)
Enzymatic activity of Structural and Functional Insights Into An Archaeal Synthase
All present enzymatic activity of Structural and Functional Insights Into An Archaeal Synthase:
2.5.1.42;
Protein crystallography data
The structure of Structural and Functional Insights Into An Archaeal Synthase, PDB code: 6m31was solved by R.Sixue, C.Wei, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 48.89 / 2.30 |
|---|---|
| Space group | P 21 21 2 |
| Cell size a, b, c (Å), α, β, γ (°) | 70, 133.49, 79.5, 90, 90, 90 |
| R / Rfree (%) | n/a / n/a |
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Structural and Functional Insights Into An Archaeal Synthase (pdb code 6m31). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structural and Functional Insights Into An Archaeal Synthase, PDB code: 6m31:
Jump to Magnesium binding site number: 1; 2;
Magnesium binding site 1 out of 2 in 6m31
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Magnesium Binding Sites List in 6m31
Magnesium binding site 1 out of 2 in the Structural and Functional Insights Into An Archaeal Synthase
Mono view
Stereo pair view
| | A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structural and Functional Insights Into An Archaeal Synthase within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg315 b:55.1 occ:1.00 OD2 A:ASP70 2.7 75.8 1.0 O A:HOH415 2.8 46.1 1.0 O A:ASP63 2.8 48.8 1.0 C A:ASP63 3.5 47.3 1.0 CD A:PRO80 3.6 50.7 1.0 CG A:ASP70 3.6 74.1 1.0 CB A:ASP63 3.6 43.0 1.0 CA A:ASP63 3.6 41.8 1.0 CB A:LEU79 3.7 47.1 1.0 CA A:ILE67 3.7 52.4 1.0 CB A:ASP70 3.8 61.9 1.0 N A:ILE67 3.8 52.1 1.0 CG A:ASP63 3.8 55.3 1.0 C A:ASP66 3.9 55.3 1.0 O A:ASP66 4.0 55.6 1.0 CD1 A:LEU79 4.1 48.3 1.0 OD1 A:ASP63 4.2 55.0 1.0 OD2 A:ASP63 4.2 65.1 1.0 CG A:LEU79 4.3 50.3 1.0 CB A:ILE67 4.4 55.4 1.0 CG A:PRO80 4.5 55.1 1.0 N A:PRO80 4.5 49.1 1.0 CB A:ASP66 4.6 51.6 1.0 CA A:LEU79 4.6 47.4 1.0 N A:LEU79 4.7 48.0 1.0 OD1 A:ASP70 4.7 76.5 1.0 CA A:ASP66 4.7 49.8 1.0 N A:ILE64 4.7 43.2 1.0 CG1 A:ILE67 4.8 55.6 1.0 CB A:ARG77 4.8 54.2 1.0 C A:ILE67 4.8 59.4 1.0 O A:ILE67 4.9 58.8 1.0 C A:LEU79 5.0 51.8 1.0 | | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
Magnesium binding site 2 out of 2 in 6m31
Go back to Magnesium Binding Sites List in 6m31
Magnesium binding site 2 out of 2 in the Structural and Functional Insights Into An Archaeal Synthase
Mono view
Stereo pair view
| | A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structural and Functional Insights Into An Archaeal Synthase within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg315 b:64.4 occ:1.00 OD2 B:ASP70 2.9 75.1 1.0 O B:HOH407 2.9 46.1 1.0 O B:ASP63 2.9 45.5 1.0 CD B:PRO80 3.3 57.3 1.0 CB B:LEU79 3.6 50.0 1.0 CG B:ASP70 3.6 71.4 1.0 C B:ASP63 3.7 46.0 1.0 CB B:ASP63 3.7 45.3 1.0 CA B:ASP63 3.7 43.6 1.0 CB B:ASP70 3.7 64.9 1.0 CA B:ILE67 3.7 55.4 1.0 N B:ILE67 3.9 54.4 1.0 CG B:ASP63 3.9 60.0 1.0 C B:ASP66 4.0 56.6 1.0 O B:ASP66 4.0 57.2 1.0 CD1 B:LEU79 4.1 52.6 1.0 CG B:PRO80 4.3 61.8 1.0 CG B:LEU79 4.3 53.4 1.0 OD1 B:ASP63 4.3 60.2 1.0 OD2 B:ASP63 4.3 68.9 1.0 N B:PRO80 4.3 55.2 1.0 CA B:LEU79 4.4 50.3 1.0 CB B:ILE67 4.4 58.3 1.0 N B:LEU79 4.5 50.2 1.0 CB B:ARG77 4.6 53.5 1.0 CB B:ASP66 4.7 51.9 1.0 OD1 B:ASP70 4.7 71.4 1.0 C B:LEU79 4.8 56.1 1.0 C B:ILE67 4.8 64.7 1.0 O B:ILE67 4.8 65.7 1.0 CA B:ASP66 4.8 50.3 1.0 CG1 B:ILE67 4.9 58.8 1.0 N B:ILE64 4.9 42.2 1.0 | | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
Reference:
R.Sixue, C.Wei. Structural and Mechanistic Insights Into the Biosynthesis of Digeranylgeranylglyceryl Phosphate Synthase in Membranes To Be Published.
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