Magnesium in PDB 6m3f: Crystal Structure of the Mouse Endonuclease Endog(H138A/C110A), Space Group P212121 (original) (raw)
Protein crystallography data
The structure of Crystal Structure of the Mouse Endonuclease Endog(H138A/C110A), Space Group P212121, PDB code: 6m3fwas solved by K.H.Park, E.J.Woo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 33.24 / 1.96 |
|---|---|
| Space group | P 21 21 21 |
| Cell size a, b, c (Å), α, β, γ (°) | 53.693, 68.880, 127.195, 90.00, 90.00, 90.00 |
| R / Rfree (%) | 16.9 / 21.9 |
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Crystal Structure of the Mouse Endonuclease Endog(H138A/C110A), Space Group P212121 (pdb code 6m3f). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of the Mouse Endonuclease Endog(H138A/C110A), Space Group P212121, PDB code: 6m3f:
Jump to Magnesium binding site number: 1; 2;
Magnesium binding site 1 out of 2 in 6m3f
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Magnesium Binding Sites List in 6m3f
Magnesium binding site 1 out of 2 in the Crystal Structure of the Mouse Endonuclease Endog(H138A/C110A), Space Group P212121
Mono view
Stereo pair view
| | A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Mouse Endonuclease Endog(H138A/C110A), Space Group P212121 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg300 b:34.5 occ:1.00 OE1 B:GLU177 2.7 18.1 1.0 O B:ALA138 2.7 21.1 1.0 O B:HOH509 2.7 22.1 1.0 O B:HOH403 3.1 36.8 1.0 CD B:GLU177 3.4 20.9 1.0 OE2 B:GLU177 3.5 19.8 1.0 C B:ALA138 3.7 19.8 1.0 O B:HOH416 3.7 38.2 1.0 CB B:ALA141 3.8 19.9 1.0 CB B:ALA138 3.8 18.2 1.0 N B:ALA138 3.8 19.0 1.0 CA B:ALA141 3.9 18.3 1.0 O B:HOH469 3.9 23.8 1.0 CA B:ALA138 4.0 19.9 1.0 O B:HOH514 4.5 19.3 1.0 O B:HOH437 4.5 14.8 1.0 OD1 B:ASN169 4.6 31.5 1.0 N B:ALA141 4.7 15.6 1.0 O B:HOH553 4.8 17.8 1.0 C B:GLY137 4.8 17.5 1.0 O B:HOH436 4.9 18.7 1.0 CG B:GLU177 4.9 15.7 1.0 N B:LEU139 4.9 14.9 1.0 N B:ALA142 4.9 17.4 1.0 C B:ALA141 5.0 16.7 1.0 | | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
Magnesium binding site 2 out of 2 in 6m3f
Go back to Magnesium Binding Sites List in 6m3f
Magnesium binding site 2 out of 2 in the Crystal Structure of the Mouse Endonuclease Endog(H138A/C110A), Space Group P212121
Mono view
Stereo pair view
| | A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the Mouse Endonuclease Endog(H138A/C110A), Space Group P212121 within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg300 b:42.0 occ:1.00 O C:HOH498 2.5 24.4 1.0 O C:HOH540 2.7 46.4 1.0 O C:HOH503 2.7 27.1 1.0 O C:HOH483 2.9 28.7 1.0 CB C:ALA138 3.6 21.2 1.0 CZ C:PHE112 4.0 27.4 1.0 CE1 C:PHE156 4.1 28.5 1.0 CB C:ALA142 4.1 28.2 1.0 CZ C:PHE156 4.3 32.5 1.0 CE1 C:PHE112 4.3 32.0 1.0 N C:ALA142 4.5 22.0 1.0 CD1 C:PHE156 4.7 25.3 1.0 O C:HOH423 4.7 26.9 1.0 N C:ALA138 4.8 21.7 1.0 O C:HOH502 4.8 29.6 1.0 CA C:ALA138 4.8 21.6 1.0 CA C:ALA142 4.9 24.6 1.0 O C:HOH494 4.9 41.0 1.0 | | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
Reference:
K.H.Park, S.M.Yoon, H.N.Song, J.H.Yang, S.E.Ryu, E.J.Woo. Crystal Structure of the Mouse Endonuclease G. Biochem.Biophys.Res.Commun. V. 526 35 2020.
ISSN: ESSN 1090-2104
PubMed: 32192768
DOI: 10.1016/J.BBRC.2020.03.060
Page generated: Tue Oct 1 10:52:46 2024