Magnesium in PDB 6m5b: X-Ray Crystal Structure of Cyclic-Pip and Dna Complex in A Reverse Binding Orientation (original) (raw)
Protein crystallography data
The structure of X-Ray Crystal Structure of Cyclic-Pip and Dna Complex in A Reverse Binding Orientation, PDB code: 6m5bwas solved by K.Abe, Y.Hirose, H.Eki, K.Takeda, T.Bando, M.Endo, H.Sugiyama, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 29.07 / 1.50 |
|---|---|
| Space group | I 41 3 2 |
| Cell size a, b, c (Å), α, β, γ (°) | 82.235, 82.235, 82.235, 90.00, 90.00, 90.00 |
| R / Rfree (%) | 18.4 / 18.9 |
Other elements in 6m5b:
The structure of X-Ray Crystal Structure of Cyclic-Pip and Dna Complex in A Reverse Binding Orientation also contains other interesting chemical elements:
Magnesium Binding Sites:
The binding sites of Magnesium atom in the X-Ray Crystal Structure of Cyclic-Pip and Dna Complex in A Reverse Binding Orientation (pdb code 6m5b). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the X-Ray Crystal Structure of Cyclic-Pip and Dna Complex in A Reverse Binding Orientation, PDB code: 6m5b:
Magnesium binding site 1 out of 1 in 6m5b
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Magnesium Binding Sites List in 6m5b
Magnesium binding site 1 out of 1 in the X-Ray Crystal Structure of Cyclic-Pip and Dna Complex in A Reverse Binding Orientation
Mono view
Stereo pair view
| | A full contact list of Magnesium with other atoms in the Mg binding site number 1 of X-Ray Crystal Structure of Cyclic-Pip and Dna Complex in A Reverse Binding Orientation within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg102 b:20.4 occ:1.00 O A:HOH210 2.1 17.6 1.0 O A:HOH220 2.1 21.4 1.0 O A:HOH217 2.1 16.9 1.0 N7 A:DG9 4.2 18.1 1.0 O6 A:DG10 4.4 17.7 1.0 O6 A:DG9 4.5 18.2 1.0 O A:HOH222 4.5 19.1 1.0 C7 A:DT8 4.8 19.2 1.0 O A:HOH206 4.9 26.9 1.0 | | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
Reference:
K.Abe, Y.Hirose, H.Eki, K.Takeda, T.Bando, M.Endo, H.Sugiyama. X-Ray Crystal Structure of A Cyclic-Pip-Dna Complex in the Reverse-Binding Orientation. J.Am.Chem.Soc. V. 142 10544 2020.
ISSN: ESSN 1520-5126
PubMed: 32401492
DOI: 10.1021/JACS.0C03972
Page generated: Tue Oct 1 10:53:56 2024