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> Plain indexing arr\[...\] should return an error for ambiguous cases. \[...\] This includes every use of vectorized indexing with multiple integer arrays.

This line concerns me. In scikit-image, we often do:

rr, cc = coords.T # coords is an (n, 2) array of integer coordinates

values = image\[rr, cc\]

Are you saying that this use is deprecated? Because we love it at scikit-image. I would be very very very sad to lose this syntax.