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I think it's time to accept PEP 485\. I've re-read it once more, and it looks like the text is in great shape. (My only recommendation would be to update the Abstract to state that we're specifically adding math.isclose().)
A wording question: "This implementation has a flag that lets the user select which relative tolerance test to apply -- this PEP does not suggest that that be retained, but rather than the weak test be selected." -- I think this was meant to say "... rather \*that\* the weak test be selected", right? (It would be nice if the sample implementation defaulted to the choice in the PEP.)