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Sequence Analyses

• Phylogeny Inference
• Model Selection
• Dating and Clocks
• Ancestral States
• Selection and Tests
• Sequence Alignment

Statistical Methods

• Maximum Likelihood
• Distance Methods
• Ordinary Least Squares
• Maximum Parsimony
• Composite Likelihood
• Bayesian

Powerful Visual Tools

• Alignment/Trace Editor
• Tree Explorer
• Data Explorers
• Legend Generator
• Gene Duplication Wizard
• Timetree Wizard