An optimized and flexible pipeline for Hi-C processing. — HiC-Pro 2.3.1 documentation (original) (raw)
Welcome to HiC-Pro’s documentation
Contents:
- HiC-Pro Quick Start Guide
- HiC-Pro Manual
- Allele specific analysis
- HiC-Pro Results
- HiC-Pro Utilities
- User cases
- COMPATIBILITY WITH OTHER SOFTWARE
- FAQ
- HiC-Pro failed. How to find what’s going wrong ?
- How can I split my .fastq files into smaller files ?
- How can I used my own annotations files
- How can I generate my annotation files ?
- Why HiC-Pro need to be run in two steps in parallel mode ?
- Does HiC-Pro support other mappers ?
- How can I create N-masked genome for allele-specific analysis ?
- What can I do once I have the iced contact maps
- How can I visualize the maps generated by HiC-Pro
- How much disk space is require for running HiC-Pro
- Frequently Reported Errors