AbundantOTU+ (original) (raw)

• AbundantOTU+ is the successor of AbundantOTU with additional functionality.
• AbundantOTU+ deals with sequences from rare species as well, compared to AbundantOTU!!
• Get the most recent release of AbundantOTU from github
• Download the software (v0.93b; released on Feb 12, 2013) (a readme file with simple instructions is included in the package)
  • Fixed a couple of uninitialized variables (thanks to Raad and Steven)
  • Note 1: You may use AbundantOTU+ as AbundantOTU by specifying -abundantonly option
  • Note 2: if AbundantOTU+ claims that many of your sequences have multiple seeds, it may indicate that your sequences contain tags. Consider cleaning up your sequences before applying AbundantOTU!
• Older versions:
  • 0.92b (released on Jan 10, 2013) (-abundantonly option added)
  • 0.91b (released on July 10, 2011)
  • 0.9b (released on Jan 25, 2011)
• Ref: Yuzhen Ye, Fast and accurate identification and quantification of abundant species from pyrosequences of 16S rRNA by consensus alignment. The Proceedings of BIBM 2010, 153-157 author's manuscript
• Contact: Yuzhen Ye (yye@indiana.edu) (web)