refgenie server - Index (original) (raw)
047c6e1eda552b50c5add59ff0995a40bc4ce1732e3cc4ae
UCSC hg38 assembly with primary chromosomes only
3
0f10d83b1050c08dd53189986f60970b92a315aa7a16a6f1
The GCA_000001635.5 seqs_for_alignment_pipelines from NCBI
16
2230c535660fb4774114bfa966a62f823fdb6d21acf138d4
The GCA_000001405.15 GRCh38_no_alt_analysis_set from NCBI
18
3cd9f8c34e28a1e8823632449b6d8a6afe5a1032245e7475
Manually curated human alpha-satellite sequences from GenBank, obtained from ref_decoy
7
43f14ba8beed34d52edb244e26f193df6edbb467bd55d37a
The mouse mitochondrial genome, doubled
7
45818b389d17308bb520512bb0d4f76764430c3eaaacc4a9
Decoy version 1 for GRCh38 from NCBI
7
4bd8aa05a153e0c96a79c53915bc8d1f4a21fb0b75f93b87
The NCBI36 cDNA reference sequence from Ensembl
2
644d2b9de4adaccb31c8bde387f23edddc5834772dd51d33
Merged genome with primary chromosomes of hg38 and mm10 from UCSC.
2
6c5f19c9c2850e62cc3f89b04047fa05eee911662bd77905
Genome of T7 phage, V01146.1 from GenBank
2
7319f9237651755047bc40d7f7a9770d42a537e840f4e105
Manually curated collection of human repeat sequences from GenBank
7
74a50bdcb018c11d17d94d44679da3cbb3cb420df0ab1e46
Manually curated human ALU repeats from GenBank, obtained from ref_decoy
6
79168fd950d561cf5ce454dd27593c0af429b32cddce5ce9
The GCA_000001895.4_Rnor_6.0_genomic from NCBI
13
8baf9d24ad8f5678f0fe1f5b21a812d410755d49e3123158
Drosophila reference genome GCF_000001215.4 from NCBI
5
94e0d21feb576e6af61cd2a798ad30682ef2428bb7eabbb4
The revised cambridge reference sequence. This is the human mitochondrial reference genome
6
9a02d64909100f146272f8e16563178e9e93c218b1126ff9
The GRCh38 cDNA reference sequence from Ensembl
3
9b7fd88cae1bd01bf53760fb426e2aeb299150cc64af2b01
The NCBI36 reference sequence from UCSC. The individual chromosome files were concatenated prior to the asset building
10
a735e331b2a8ae5cd4e7519575c4c09426a276175c57bd79
The GRCh38 reference with decoy and without alternative haplotypes from NCBI
7
b769bcf2deaf9d061d94f2007a0e956249905c64653cb5c8
Human rDNA sequences curated from GenBank
7
baa91c8f6e2780cfd8fd1040ff37f51c379947a2a4820d6c
The GRCh37 reference sequence from UCSC
17
bfdbdd006617e34e64b298f48785022d9376acad57260aaf
UCSC mm10 assembly with primary chromosomes only
3
d982f0b1888504cccc131d5fa2c11eb3522b9a8e95e0ea89
The Rnor_6.0 cDNA reference sequence from Ensembl
3
fa159612d40b1bedea9a279eb24999b3d27145f9dd70dcca
The GRCm38 cDNA reference sequence from Ensembl
3
fc77e33fa26398662380748a62ab6279dab2a637256acd89
The GRCh37 cDNA reference sequence from Ensembl
3
fec6bcce9821b57f98ffc5d46ebec4f2f756c2e9db800ab7
Includes only chromosome 22 from the hg38 reference. Useful for testing.
7