Genome-wide mapping of the cohesin complex in the yeast S. cerevisiae (original) (raw)

Cy3

Cy5

Experiment group

Array type

Sample type

Strain background

Arrest method

Antibody

UP3_84FR

ChIP

total genomic DNA

cdc16 Mcd1-18Myc W303

Uber
(ORF + intergenic)

ChIP

W303

ts-cdc16

anti-Myc

UP3_85FR

ChIP

total genomic DNA

cdc16 Mcd1-18Myc W303

Uber

ChIP

W303

ts-cdc16

anti-Myc

UP2_13

total genomic DNA

ChIP

cdc16 Mcd1-18Myc W303

Uber

ChIP

W303

ts-cdc16

anti-Myc

UP2_19

total genomic DNA

ChIP

cdc16 Mcd1-18Myc W303

Uber

ChIP

W303

ts-cdc16

anti-Myc

UP3_48

total genomic DNA

ChIP

cdc16 Mcd1-18Myc W303

Uber

ChIP

W303

ts-cdc16

anti-Myc

UP3_51

total genomic DNA

ChIP

cdc16 Mcd1-18Myc W303

Uber

ChIP

W303

ts-cdc16

anti-Myc

SIMRUP2_226

total genomic DNA

ChIP

cdc16 Smc3-6Myc A364a

Uber

ChIP

A364a

ts-cdc16

anti-Myc

SIMRUP2_187

ChIP

total genomic DNA

cdc16 Smc3-6Myc A364a

Uber

ChIP

A364a

ts-cdc16

anti-Myc

SIMRUP2_191

ChIP

total genomic DNA

cdc16 Smc3-6Myc Mcd1-6HA MycChIP A364a

Uber

ChIP

A364a

ts-cdc16

anti-Myc

SIMRUP2_254

total genomic DNA

ChIP

cdc16 Smc3-6Myc Mcd1-6HA MycChIP A364a

Uber

ChIP

A364a

ts-cdc16

anti-Myc

SIMRUP2_190

ChIP

total genomic DNA

cdc16 Smc3-6Myc Mcd1-6HA HAChIP A364a

Uber

ChIP

A364a

ts-cdc16

anti-HA

SIMRUP2_244

total genomic DNA

ChIP

cdc16 Smc3-6Myc Mcd1-6HA HAChIP A364a

Uber

ChIP

A364a

ts-cdc16

anti-HA

SIMRUP2_170

ChIP

total genomic DNA

cdc16 Mcd1-6HA A364a

Uber

ChIP

A364a

ts-cdc16

anti-HA

SIMRUP2_171

ChIP

total genomic DNA

cdc16 Mcd1-6HA A364a

Uber

ChIP

A364a

ts-cdc16

anti-HA

SIMRUP2_178

total genomic DNA

ChIP

cdc16 Mcd1-6HA A364a

Uber

ChIP

A364a

ts-cdc16

anti-HA

SIMRUP2_180

total genomic DNA

ChIP

cdc16 Mcd1-6HA A364a

Uber

ChIP

A364a

ts-cdc16

anti-HA

SIMRUP2_147

ChIP

total genomic DNA

cdc16 Mcd1-6HA A364a

Uber

ChIP

A364a

ts-cdc16

anti-HA

UP5_164

total genomic DNA

ChIP

Mcd1-18Myc W303 NZ glu ChIP

Uber

ChIP

W303

NZ

anti-Myc

UP5_80

total genomic DNA

ChIP

Mcd1-18Myc W303 NZ glu ChIP

Uber

ChIP

W303

NZ

anti-Myc

UP6_210

total genomic DNA

ChIP

Mcd1-18Myc W303 NZ glu ChIP

Uber

ChIP

W303

NZ

anti-Myc

UP6_213

total genomic DNA

ChIP

Mcd1-18Myc W303 NZ glu ChIP

Uber

ChIP

W303

NZ

anti-Myc

UP6_217

ChIP

total genomic DNA

Mcd1-18Myc W303 NZ glu ChIP

Uber

ChIP

W303

NZ

anti-Myc

UP6_223

total genomic DNA

ChIP

Mcd1-18Myc W303 NZ glu ChIP

Uber

ChIP

W303

NZ

anti-Myc

UP6_124

ChIP

total genomic DNA

Mcd1-18Myc W303 NZ glu ChIP

Uber

ChIP

W303

NZ

anti-Myc

UP6_214

total genomic DNA

ChIP

Mcd1-18Myc W303 NZ gal ChIP

Uber

ChIP

W303

NZ

anti-Myc

UP6_218

ChIP

total genomic DNA

Mcd1-18Myc W303 NZ gal ChIP

Uber

ChIP

W303

NZ

anti-Myc

UP6_221

ChIP

total genomic DNA

Mcd1-18Myc W303 NZ gal ChIP

Uber

ChIP

W303

NZ

anti-Myc

UP6_225

total genomic DNA

ChIP

Mcd1-18Myc W303 NZ gal ChIP

Uber

ChIP

W303

NZ

anti-Myc

YA1S4P2_109

polyA+ reference RNA

polyA+ RNA

Mcd1-18Myc W303 NZ glu exp

ORF

expression

W303

NZ

N/A

YA1S4P2_125

polyA+ reference RNA

polyA+ RNA

Mcd1-18Myc W303 NZ glu exp

ORF

expression

W303

NZ

N/A

YA1S4P2_115

polyA+ RNA

polyA+ reference RNA

Mcd1-18Myc W303 NZ glu exp

ORF

expression

W303

NZ

N/A

YA1S4P2_111

polyA+ RNA

polyA+ reference RNA

Mcd1-18Myc W303 NZ glu exp

ORF

expression

W303

NZ

N/A

YA1S4P2_112

polyA+ reference RNA

polyA+ RNA

Mcd1-18Myc W303 NZ glu exp

ORF

expression

W303

NZ

N/A

YA1S4P2_106

polyA+ reference RNA

polyA+ RNA

Mcd1-18Myc W303 NZ gal exp

ORF

expression

W303

NZ

N/A

YA1S4P2_114

polyA+ RNA

polyA+ reference RNA

Mcd1-18Myc W303 NZ gal exp

ORF

expression

W303

NZ

N/A

YA1S4P2_108

polyA+ RNA

polyA+ reference RNA

Mcd1-18Myc W303 NZ gal exp

ORF

expression

W303

NZ

N/A

YA1S4P2_110

polyA+ reference RNA

polyA+ RNA

Mcd1-18Myc W303 NZ gal exp

ORF

expression

W303

NZ

N/A

UP3_30

total genomic DNA

ChIP

Rec8-3HA SK1 t4h

Uber

ChIP

SK1

t=4h

anti-HA

UP3_86

total genomic DNA

ChIP

Rec8-3HA SK1 t4h

Uber

ChIP

SK1

t=4h

anti-HA

UP3_186

ChIP

total genomic DNA

Rec8-3HA SK1 t6h

Uber

ChIP

SK1

t=6h

anti-HA

UP3_190

ChIP

total genomic DNA

Rec8-3HA SK1 t6h

Uber

ChIP

SK1

t=6h

anti-HA

UP3_187

ChIP

total genomic DNA

Rec8-3HA SK1 t8h

Uber

ChIP

SK1

t=8h

anti-HA

UP3_191

ChIP

total genomic DNA

Rec8-3HA SK1 t8h

Uber

ChIP

SK1

t=8h

anti-HA

UP3_188

ChIP

total genomic DNA

Rec8-3HA SK1 t10h

Uber

ChIP

SK1

t=10h

anti-HA

UP3_87

total genomic DNA

ChIP

Rec8-3HA SK1 t10h

Uber

ChIP

SK1

t=10h

anti-HA

UP3_29

total genomic DNA

ChIP

Rec8-3HA SK1 t12h

Uber

ChIP

SK1

t=12h

anti-HA

UP3_89

total genomic DNA

ChIP

Rec8-3HA SK1 t12h

Uber

ChIP

SK1

t=12h

anti-HA

UP4_224

total genomic DNA

ChIP

Mcd1-3HA SK1 NZ

Uber

ChIP

SK1

NZ

anti-HA

UP4_225

total genomic DNA

ChIP

Mcd1-3HA SK1 NZ

Uber

ChIP

SK1

NZ

anti-HA

UP6_205

total genomic DNA

ChIP

Mcd1-6HA S288c NZ

Uber

ChIP

S288c

NZ

anti-HA

SIMRUP2_185

ChIP

total genomic DNA

Mcd1-6HA S288c NZ

Uber

ChIP

S288c

NZ

anti-HA

SIMRUP2_228

total genomic DNA

ChIP

Mcd1-6HA S288c NZ

Uber

ChIP

S288c

NZ

anti-HA

SIMRUP2_230

total genomic DNA

ChIP

Mcd1-6HA S288c NZ

Uber

ChIP

S288c

NZ

anti-HA

SIMRUP2_183

ChIP

total genomic DNA

Mcd1-6HA S288c NZ

Uber

ChIP

S288c

NZ

anti-HA

SIMRUP2_184

ChIP

total genomic DNA

Mcd1-6HA ndc10-42 S288c NZ

Uber

ChIP

S288c

NZ

anti-HA

SIMRUP2_229

total genomic DNA

ChIP

Mcd1-6HA ndc10-42 S288c NZ

Uber

ChIP

S288c

NZ

anti-HA

SIMRUP2_231

total genomic DNA

ChIP

Mcd1-6HA ndc10-42 S288c NZ

Uber

ChIP

S288c

NZ

anti-HA