MAGeCK / Wiki / libraries (original) (raw)
Commonly used libraries
Download frequently used libraries
For your convenience, we provide a set of library files that are ready to be used in MAGeCK (in the -l/--list-seq option of the count command) in the libraries folder. You can also create your own library files, see sgrna-library-file for more details.
| File | Explanation |
|---|---|
| broadgpp-brunello-library-corrected.txt.zip | Human Brunello genome-wide library developed by Broad Institute |
| Human_GeCKOv2_Library_A_3_mageck.csv.zip | Human GeCKO v2 half-library A (can be used in either 1- or 2-plasmid systems) |
| Human_GeCKOv2_Library_B_1_mageck.csv.zip | Human GeCKO v2 half-library B |
| Human_GeCKOv2_Library_combine.csv.zip | Human GeCKO v2 combined library of A and B |
| mouse_geckov2_library_a_2_mageck.csv.zip | Mouse GeCKO v2 half-library A (can be used in either 1- or 2-plasmid systems) |
| mouse_geckov2_library_b_1_mageck.csv.zip | Mouse GeCKO v2 half-library B |
| mouse_geckov2_library_combine.csv.zip | Mouse GeCKO v2 combined library of A and B |
| GeCKOv1.txt.zip | GeCKO v1 library file (from the GeCKO Science paper) |
| human_sam_library.csv.zip | Human Synergistic Activation Mediator (SAM) pooled library (CRISPRa library), generated by Feng Zhang laboratory. |
| yusa_library.csv.zip | Mouse knockout library generated by Kosuke Yusa laboratory. |
| tim_library.txt.zip | Human CRISPR knockout library of 7,000 genes (from T. Wang Science 2014). |
| tim_science2015_library.txt.zip | Human CRISPR pooled library of 18,166 genes (from T.Wang Science 2015). |