SwissRegulon (original) (raw)
Swiss Institute of Bioinformatics
SwissRegulon Portal
Services:
Danio Rerio (dr10:DANIO-CODE)
- Promoters
- Motevo predictions of binding sites
- Regulatory motifs (weight matrices)
- Association of regulatory motifs with TFs (format description)
Danio Rerio (dr11)
- Promoters
- Motevo predictions of binding sites
- Regulatory motifs (weight matrices)
- Association of regulatory motifs with TFs (format description)
Homo Sapiens (hg38:FANTOM5)
- Promoters
- Motevo predictions of binding sites
- Regulatory motifs (weight matrices)
- Association of regulatory motifs with TFs (format description)
Homo Sapiens (hg19:FANTOM5)
- Transcription start clusters
- Promoters
- Motevo predictions of binding sites
- Regulatory motifs (weight matrices)
- Association of regulatory motifs with TFs (format description)
Homo Sapiens (hg19)
- Transcription start clusters
- Promoters
- Motevo predictions of binding sites
- Regulatory motifs (weight matrices)
- Association of regulatory motifs with TFs (format description)
Homo Sapiens (hg18)
- Transcription start sites
- Transcription start clusters
- Transcription start regions
- Promoters
- Motevo predictions of binding sites
- Regulatory motifs (weight matrices)
- Association of regulatory motifs with TFs (format description)
Mus Musculus (mm10:FANTOM5)
- Transcription start clusters
- Promoters
- Motevo predictions of binding sites
- Regulatory motifs (weight matrices)
- Association of regulatory motifs with TFs (format description)
Mus Musculus (mm9)
- Transcription start sites
- Transcription start clusters
- Transcription start regions
- Promoters
- Motevo predictions of binding sites
- Regulatory motifs (weight matrices)
- Association of regulatory motifs with TFs (format description)
Rattus Norvegicus (rn6)
- Promoters
- Motevo predictions of binding sites
- Regulatory motifs (weight matrices)
- Association of regulatory motifs with TFs (format description)
Saccharomyces cerevisiae
- Predicted total occupancy of TFs (wig)
- Predicted nucleosome occupancy by the biophysical model with 158 TFs taken into account (wig)
- Predicted nucleosome occupancy by the biophysical model using binding energies from Kaplan et.al and WITHOUT TFs (wig)
- Experimental nucleosome occupancy (ChIP-Chip Lee et al. 2007) (wig)
- Predicted TF binding sites (gff)
- Individual TF ocupancy files (wig)
- Motif Weight Matrices
Escherichia coli
- IRUS predictions
- MotEvo predictions based on known TF binding sites
- Regulatory motifs (weight matrices)