T-COFFEE Multiple Sequence Alignment Server (original) (raw)

• Align Protein

sequences
Structural alignments (Expresso)
Combine popular aligners (M-Coffee)
Transmembrane proteins (PSI/TM-Coffee)
Homology extension (PSI-Coffee)

• Align RNA

sequences
Secondary structure (R-Coffee)
Tertiary structure (SARA-Coffee)
Combine popular aligners (M-Coffee)

• Align DNA

sequences
Combine popular aligners (M-Coffee)
Homologous promoter regions (Pro-coffee)

Evaluation

TCS	Evaluates your Alignment and outputs a Colored version indicating the local reliability. >> Cite
iRMSD-APDB	Evaluates Multiple Sequence Alignment using structural information with APDB and iRMSD. >> Cite
T-RMSD	Allows fine-grained structural clustering of a given group of related protein domains >> Cite
Strike	Evaluation of protein MSAs using a single 3D structure >> Cite

Other