Sequence Assembly and Alignment Software (original) (raw)

Sequence Assembly with CodonCode Aligner

CodonCode Aligner is an easy-to-use program for sequence assembly, contig editing, and mutation detection. Features include:

Multiple sequence assembly and sequence alignment algorithms
Manual and automated sequence editing
Align contigs to each other and get back to the underlying trace data with a simple double-click
Reference sequences and difference tables
Sensitive mutation detection
Advanced methods for heterozygous indel analysis
Automation tools: assemble by name & scripting
Restriction cloning, Gibson Assembly, RFLP analysis, Primer design

CodonCode Aligner offers many unique features not found in other programs, but is significantly more affordable.

Download the demo version and get a fully functional 30-day trial. No forms to fill out.

Available for Windows and Mac OS X. Demo versions can be upgraded to the full version by entering a purchased license key.

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**CodonCode Aligner 11.0 is now available

New features in version 11:

Gibson Assembly

Synchronize starts

Annotate common features

and more...

More details can be found here

Watch the video introduction to Aligner
Look at the tutorials
More about CodonCode Aligner
See how CodonCode Aligner can accelerate your DNA sequence analysis in Evolution research
Read CodonCode Aligner's extensive online help, available through the Help menu and as a PDF help file.