WebDBGET Entry Retrieval Failed (original) (raw)

Entry name is required as an argument.

usage: www_bget [seqopt|dataopt] db:entry [db:entry ...] [wwwopt] www_bget [seqopt|dataopt] db entry [entry ...] [wwwopt] www_bget [seqopt|dataopt] db entry [db:entry ...] [wwwopt] whrere: seqopt : -f [-n num[,num ...] dataopt: -f k for GLYCAN, RPAIR, DRUG and COMPOUND -f m for DRUG and COMPOUND wwwopt : -kcf -kcf for GLYCAN, RPAIR, DRUG and COMPOUND

Retrieve a single entry: https://www.genome.jp/dbget-bin/www_bget?**dbname+identifier** https://www.genome.jp/dbget-bin/www_bget?**dbname:identifier**

   **dbname** = Database name or organism name
   **identifier** = Entry name (accession number) or gene name

ex.) https://www.genome.jp/dbget-bin/www_bget?ko:K00001 https://www.genome.jp/dbget-bin/www_bget?cpd+C00001

Retrieve multiple entries: https://www.genome.jp/dbget-bin/www_bget?**dbname+identifier1+identifier2+...** https://www.genome.jp/dbget-bin/www_bget?**dbname1:identifier1+dbname2:identifier2+...**

   The first form is applicable only to multiple entries from a single database.

ex.) https://www.genome.jp/dbget-bin/www_bget?hsa+20+21+22 https://www.genome.jp/dbget-bin/www_bget?hsa:20+hsa:21+hsa:22

Retrieve sequence entries in FASTA format: https://www.genome.jp/dbget-bin/www_bget?**-f+dbname+identifier1+identifier2+...** https://www.genome.jp/dbget-bin/www_bget?**-f+dbname1:identifier1+dbname2:identifier2+...**

   When the entry contains multiple sequences, specify as follows:
   **-f+-n+1** first sequence in FASTA format
   **-f+-n+2** second sequence in FASTA format
   **-f+-n+a** amino acid sequence in FASTA format (GENES database only)
   **-f+-n+n** nucleotide sequence in FASTA format (GENES database only)

ex.) https://www.genome.jp/dbget-bin/www_bget?-f+eco:b0002 https://www.genome.jp/dbget-bin/www_bget?-f+-n+a+eco:b0002

Retrieve entries with KCF data for GLYCAN, RPAIR, DRUG and COMPOUND https://www.genome.jp/dbget-bin/www_bget?**dbname+identifier1+identifier2+...+-kcf** https://www.genome.jp/dbget-bin/www_bget?**dbname1:identifier1+dbname2:identifier2+...+-kcf**

ex.) https://www.genome.jp/dbget-bin/www_bget?cpd+C00032+-kcf

Retrieve KCF entries for GLYCAN, RPAIR, DRUG and COMPOUND https://www.genome.jp/dbget-bin/www_bget?**-f+k+dbname+identifier1+identifier2+...** https://www.genome.jp/dbget-bin/www_bget?**-f+k+dbname1:identifier1+dbname2:identifier2+...**

ex.) https://www.genome.jp/dbget-bin/www_bget?-f+k+cpd+C00032

Retrieve MOL entries for DRUG and COMPOUND https://www.genome.jp/dbget-bin/www_bget?**-f+m+dbname+identifier1+identifier2+...** https://www.genome.jp/dbget-bin/www_bget?**-f+m+dbname:identifier1+dbname:identifier2+...**

ex.) https://www.genome.jp/dbget-bin/www_bget?-f+m+cpd+C00032

The list of options may be viewed by the -h option: https://www.genome.jp/dbget-bin/www_bget?-h

DBGET integrated database retrieval system