Haplogroup C1 (original) (raw)
'mtDNA'
Haplogroup C1.
Click link to see tree diagrams for this haplogroup.
Haplogroups C1a & C1b tree
Haplogroups C1c & C1d tree
Haplogroup C1 is an Eastern Asian and American group
Here are the examples of sequences for this haplogroup:
Ingman A50.JS AF347012(Warao) C1d
Ingman A51.JS AF347013(Warao) C1d
Maca-Meyer A29.JS AF382009.2(Canary) C1b
Mishmar A15.JS AY195759.2(N American) C1b
Starik. A13.JS AY519496.2(Ulchi) C1a
Tanaka (11)A39.JS TCsq0052(Japanese) C1a
Parsons DQ282447(Hispanic) C1b
Parsons DQ282448(Hispanic) C1b
Parsons DQ282449(Hispanic) C1b
Parsons DQ282450(Hispanic) C1b
Parsons DQ282451(Hispanic) C1b
Parsons DQ282452(Hispanic) C1b
Parsons DQ282453(Hispanic) C1b
Parsons DQ282454(Hispanic) C1b
Parsons DQ282455(Hispanic) C1b
Parsons DQ282456(Hispanic) C1b
Parsons DQ282457(Hispanic) C1b
Parsons DQ282458.2(Hispanic) C1b
Parsons DQ282459(Hispanic) C1c
Parsons DQ282460(Hispanic) C1c
Parsons DQ282461(Hispanic) C1b
Parsons DQ282462(Hispanic) C1c
Parsons DQ282463(Hispanic) C1c
Parsons DQ282464(Hispanic) C1b
Parsons DQ282465(Hispanic) C1c
Parsons DQ282466(Hispanic) C1c
Parsons DQ282467(Hispanic) C1c
Parsons DQ282468(Hispanic) C1c
Parsons DQ282469(Hispanic) C1b
Parsons DQ282470(Hispanic) C1c
Parsons DQ282471(Hispanic) C1c
Parsons DQ282472(Hispanic) C1d
Parsons DQ282473(Hispanic) C1d
Parsons DQ282474(Hispanic) C1d
Parsons DQ282475(Hispanic) C1b
Parsons DQ282476(Hispanic) C1b
Derenko EF153779 C1a
Ingman_gyll EU007858(Nanaitci) C1a
Tamm EU095527(Arsario) C1c
Tamm EU095537(Coreguaje) C1d
Tamm EU095544(Kogui) C1c
Tamm EU095549(Wayuu) C1b
FTDNA EU327891 C1c
FTDNA EU327973 C1c
Kivisild DQ112789.2(America) C1d CODING AREA ONLY
Kivisild DQ112846.2(America) C1b CODING AREA ONLY
Kivisild DQ112888.2(America) C1c CODING AREA ONLY
Herrnstadt EF657282 mtDNA145(Asia) C1b CODING AREA ONLY
Herrnstadt EF657314 mtDNA174(Asia) C* CODING AREA ONLY
Herrnstadt EF657317 mtDNA177(Asia) C1c CODING AREA ONLY
Herrnstadt EF657324 mtDNA183(Asia) C1c CODING AREA ONLY
Hernstadt EF657329 mtDNA188(Asia) C1c CODING AREA ONLY
Herrnstadt EF657355 mtDNA210(Asia) C1c CODING AREA ONLY
Herrnstadt EF657504 mtDNA345(Asia) C1d CODING AREA ONLY
Herrnstadt EF657547 mtDNA384(Asia) C1c CODING AREA ONLY
Herrnstadt EF657584 mtDNA417(Asia) C1b CODING AREA ONLY
Herrnstadt EF657588 mtDNA420(Asia) C1c CODING AREA ONLY
Fagundes A29.JS EU095222(Waiwai) C1
Fagundes A30.JS EU095223(Zoro) C1b
Fagundes A31.JS EU095224(Zoro) C1b
Fagundes A32.JS EU095225(Quechua) C1b
Fagundes A33.JS EU095226(Quechua) C1b
Fagundes A34.JS EU095227(Arara) C1b
Fagundes A35.JS EU095228(Poturujara) C1b
Fagundes A36.JS EU095229(Yanomama) C1b
Fagundes A37.JS EU095230(Yanomama) C1b
Fagundes A38.JS EU095231(Yanomama) C1b
Achilli EU431085(USA) C1b4 01-AUG-2008
Achilli EU431086(Canada) C1c
Achilli EU431087(USA) C1c
Hartmann EU597533(Pima, Mexico) C1 06-APR-2008
Hartmann EU597545(Pima, Mexico) C1b 06-APR-2008
Hartmann EU597557(Pima, Mexico) C1b 06-APR-2008
FTDNA EU617323 C1c 13-APR-2008
FTDNA GQ397486(Puerto Rico) C1b2a 09-AUG-2009
The sequences has these differences from the CRS:
- for the main stem leading from H:
73 263 750 1438 2706 4769 7028 8701 8860 9540 10398 10873 11719 12705 14766 15301 15326 16223
- and for the M* branch:
489 10400 14783 15043
- and for haplogroups C, Z, & M8:
4715 7196 8584 15487 16298
- and for C:
249- 3552 9545 11914 13263 14318 16327
- and for C1 C522- C523- A290- A291- T16325C
Allowing for
- the variable 16519,
- and changes at 309-315
the mutation list is:
Ingman A50.JS AF347012(Warao) C1d C194T A200G G3010A A6770G G7697A G9591A A16051G T16189C 16193.C G16438A
Ingman A51.JS AF347013(Warao) C1d C194T A200G G3010A G7697A G9591A A16051G T16189C 16193.C 16193.C G16438A
Maca-Meyer A29.JS AF382009.2(Canary) C1b A493G G7013A C9557T G12454A T12574C
Mishmar A15.JS AY195759.2(N American) C1b A493G T5493C G6962A T8555C A10151G T11147C
Starik. A13.JS AY519496.2(Ulchi) (C522- A523-) C1a T3826C G7598A T16356C
Tanaka (11)A39.JS AP008311 TCsq0052(Japanese) C1a A93G T2887C T3826C G7598A C9099A T9750C G13590A G15773A T16093C
C16192T T16356C
Parsons DQ282447(Hispanic) C1b A493G C4242T G7013A C9557T G12454A
Parsons DQ282448(Hispanic) C1b A493G C4242T G7013A C9557T G12454A
Parsons DQ282449(Hispanic) C1b A493G C4242T G7013A C9557T G12454A C14883T
Parsons DQ282450(Hispanic) C1b A493G C4242T G7013A C9557T G12454A
Parsons DQ282451(Hispanic) C1b A493G C4242T G7013A C9557T G12454A
Parsons DQ282452(Hispanic) C1b A493G C4242T G7013A C9557T G12454A
Parsons DQ282453(Hispanic) C1b A493G C4242T G7013A C9557T G12454A C16223Y
Parsons DQ282454(Hispanic) C1b A493G C4242T G7013A C9557T G12454A
Parsons DQ282455(Hispanic) C1b A493G C4242T G7013A C9557T G12454A
Parsons DQ282456(Hispanic) C1b A493G C4242T G7013A C9557T G12454A
Parsons DQ282457(Hispanic) C1b A493G C4242T G7013A C9557T G12454A
Parsons DQ282458.2(Hispanic) C1b A493G C4242T G7013A C9557T G12454A
Parsons DQ282459(Hispanic) C1c G1888A A12397G G15930A
Parsons DQ282460(Hispanic) C1c G1888A G3316A A4784G C7948T A8973G A12193G G15930A
Parsons DQ282461(Hispanic) C1b A493G T1005C A5605G A11989G G15119A
Parsons DQ282462(Hispanic) C1c T450C T1055G G1888A G3010A G11440A T11794C C14356T G15930A
Parsons DQ282463(Hispanic) C1c G1888A A3948G A8700T T12696C G15930A
Parsons DQ282464(Hispanic) C1b A493G A5664G T6293C G12630A
Parsons DQ282465(Hispanic) C1c G1888A T11617C G15930A G16526A
Parsons DQ282466(Hispanic) C1c G1888A G3010A G11440A T11794C C14356T G15930A
Parsons DQ282467(Hispanic) C1c G1888A G3010A G11440A T11794C C14356T G15930A
Parsons DQ282468(Hispanic) C1c G1888A G3010A G11440A T11794C C14356T G15930A
Parsons DQ282469(Hispanic) C1b A493G T1005C G3357T C7628A A11989G G15119A C15790T
Parsons DQ282470(Hispanic) C1c G1888A G3010A G11440A T11794C C14356T G15930A T16368C
Parsons DQ282471(Hispanic) C1c G1888A G3010A G11440A T11794C C14356T G15930A
Parsons DQ282472(Hispanic) C1d G7697A G9196A A16051G C16188T G16204A T16362C C16527T
Parsons DQ282473(Hispanic) C1d G7697A A16051G C16188T G16204A T16362C C16527T
Parsons DQ282474(Hispanic) C1d G7697A A16051G C16188T G16204A T16362C C16527T
Parsons DQ282475(Hispanic) C1b G143A A493G C4167T T9530C A14524G T16086C A16183- T16189C 16193.1C 16193.2N C16278T
Parsons DQ282476(Hispanic) C1b G143A A493G C4167T A14524G T16086C A16183- T16189C 16193.1C 16193.2N C16278T
Derenko EF153779 C1a A93G T3826C T5774C G7598A T16356C
Ingman_gyll EU007858(Nanaitci) C1a A93G C375T T3826C G7598A T16093C T16356C
Tamm EU095527(Arsario) C1c G1888A A3140G G3705A A4316G T6815C T7022A C12545T G15140A T15479C G15497A T15670C G15930A A16265G G16319A
Tamm EU095537(Coreguaje) C1d C194T T1452C A5836G A6272G G7697A A8425G C13770T T15852C G15884A A16051G T16172C
Tamm EU095544(Kogui) C1c G1888A A3140G G3705A A4435G T6815C T7022A T15479C G15497A T15670C G15930A A16265G G16319A
Tamm EU095549(Wayuu) C1b T485C A493G A3768G A5600G A6872G T13734C T15465C
FTDNA EU327891 C1c G1888A A9254G C13839T G15930A C16114T
FTDNA EU327973 C1c G1888A A6575G C15740T G15930R T16093C G16485A G16490A T16491C G16496A
Kivisild DQ112789.2(America) C1d CODING AREA ONLY G1719A G7697A G12501A G15106A
Kivisild DQ112846.2(America) C1b CODING AREA ONLY A493G G1719A G7337A T10084C G11447A
Kivisild DQ112888.2(America) C1c CODING AREA ONLY G1888A G12618A A13321G T13879C T14581C T15313C G15930A
Herrnstadt EF657282 mtDNA145(Asia) C1b CODING AREA ONLY C4242T G7013A C9557T G12454A
Herrnstadt EF657314 mtDNA174(Asia) C* CODING AREA ONLY A5894G G6261A C7985G A10397G G13813A T14215C
Herrnstadt EF657317 mtDNA177(Asia) C1c CODING AREA ONLY G1888A C10853T C12092T T12414C T15670C G15930A
Herrnstadt EF657324 mtDNA183(Asia) C1c CODING AREA ONLY G1888A A12642G A12978G G15930A
Hernstadt EF657329 mtDNA188(Asia) C1c CODING AREA ONLY G1888A A12642G A12978G G15930A
Herrnstadt EF657355 mtDNA210(Asia) C1c CODING AREA ONLY G1888A T2486C A4315T G12372A A14769G G15077A G15119A G15930A
Herrnstadt EF657504 mtDNA345(Asia) C1d CODING AREA ONLY G7697A T15670C
Herrnstadt EF657547 mtDNA384(Asia) C1c CODING AREA ONLY G1888A T11617C G13359A G15930A
Herrnstadt EF657584 mtDNA417(Asia) C1b CODING AREA ONLY T11147C
Herrnstadt EF657588 mtDNA420(Asia) C1c CODING AREA ONLY G1888A G2735A A12978G G15930A
Fagundes A29.JS EU095222(Waiwai) C1 C194T G7697A T8503C T12879C A16051G T16311C
Fagundes A30.JS EU095223(Zoro) C1b C114T A493G T8383C G10586A A12193G T16093C C16256T
Fagundes A31.JS EU095224(Zoro) C1b C114T A493G T8383C G10586A A12193G T16093C
Fagundes A32.JS EU095225(Quechua) C1b A493G C4014T G4491A T13656C T16199C A16254G
Fagundes A33.JS EU095226(Quechua) C1b A493G G6456A C13545T A16318C
Fagundes A34.JS EU095227(Arara) C1b A493G 960.C C3764T G4924A G8078A C16292T T16362C
Fagundes A35.JS EU095228(Poturujara) C1b T195C A493G C5238T T14788C
Fagundes A36.JS EU095229(Yanomama) C1b A493G T8848C T13326C T16271C T16357C
Fagundes A37.JS EU095230(Yanomama) C1b C441G A493G C568N T8848C T13326C T16271C T16357C
Fagundes A38.JS EU095231(Yanomama) C1b A493G T8848C G10310A T13326C T16271C T16357C
Achilli
Achilli EU431086(Canada) C1c C150T T152C G1888A T3394C A4702G T5162C G7853A G8251A C15007T G15930A
Achilli EU431087(USA) C1c G1888A A9254G A15613G G15930A C16114T T16357C T16512C
Hartmann EU597517(Mongolia, China HGDP01225) Haplogroup C A73G T195C A249. A263G 309.C 309.C 315.C T489C A750G A1438G
C1715T 2232.A A2706G C3107N T3552A A4715G A4769G G6026A C7028T C7196A
T7310C T7999C G8584A A8701G A8860G T9540C A9545G A10398G C10400T T10873C
G11719A G11914A G11969A A12672G C12705T A13263G C13583T T14318C C14766T T14783C
G15043A T15204C G15301A A15326G A15487T T15968C C16114A G16129A C16223T C16291Y
T16298C C16327T T16519C
- Hartmann EU597533(Pima, Mexico HGDP01037) Haplogroup C A73G A215G A249. A263G A290. A291. 309.C 309.C 315.C T489C
A750G A1438G G1888A A2706G C3107N T3552A A4715G A4769G C7028T C7196A
G8584A A8701G A8860G T9540C A9545G A10398G C10400T T10873C G11719A G11914A
C12705T A12978G A13263G T14318C C14766T T14783C G15043A G15301A A15326G A15487T
G15930A C16223T T16298C T16325C C16327T
- EU597542(Yakut, Siberia HGDP00947) Hartmann Haplogroup C A73G A249. A263G 315.C T489C 595.C A750G A1438G A2706G C3107N
T3552A G3591A A4715G A4769G C4904T C7028T C7196A C8140T G8584A A8701G
A8860G A9007G T9540C A9545G A10398G C10400T T10873C G11719A G11914A C12705T
A13263G T14318C C14766T T14783C G15043A G15301A A15326G A15487T C16223T C16261T
T16288C T16298C T16519C
- FTDNA3 A44.JS EU617323 Haplogroup C1c A73G A249. A263G A290. A291. 309.C 315.C T489C A750G A1438G
G1888A A2706G T3552A A4715G A4769G A6575G C7028T C7196A G8584A A8701G
A8860G T9540C A9545G A10398G C10400T T10873C G11719A G11914A C12705T A13263G
T14318C C14766T T14783C G15043A G15301A A15326G A15487T C15740T G15930A T16093C
C16223T T16298C T16325C C16327T G16485A G16490A T16491C G16496A T16519C
- FTDNA GQ397486(Puerto Rico) C1b2a 09-AUG-2009 A73G A249- A290- A291- 315.1C T489C A493G C522- A523- A750G A1438G A2706G T3552A C4242T A4715G A4769G G7013A C7028T C7196A G8584A A8701G A8860G T9540C A9545G C9557T A10398G C10400T T10873C G11719A G11914A G12454A C12705T A13263G T14318C C14766T T14783C G15043A G15301A A15326G A15487T C16223T T16298C T16325C C16327T T16519C
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2009