Ssr4 MGI Mouse Gene Detail - MGI:1099464 (original) (raw)

Summary

Symbol
Ssr4
Name
signal sequence receptor, delta
Synonyms
Trap
Feature Type
protein coding gene
IDs
MGI:1099464
NCBI Gene:20832
Alliance
Transcription Start Sites
6 TSS

Location &
Maps

Sequence Map
ChrX:72830778-72834432 bp, + strand
From NCBI annotation of GRCm39
Genome Browsers
Genetic Map
Chromosome X, 37.41 cM
Mapping Data
3 experiments

Strain
Comparison

SNPs within 2kb
108 from dbSNP Build 142
Strain Annotations
18

Homology

Human Ortholog
SSR4, signal sequence receptor subunit 4
Vertebrate Orthologs
3

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog
SSR4, signal sequence receptor subunit 4
Synonyms
CDG1Y, TRAPD
Links
Chr Location
Xq28; chrX:153793516-153798512 (+) GRCh38

MGI Vertebrate Homology
HCOP
vertebrate homology predictions:SSR4
Gene Tree

Human Diseases

Diseases
1 with human SSR4 associations

Mutations,
Alleles, and
Phenotypes

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Phenotype Summary
6 phenotype references
All Mutations and Alleles
Endonuclease-mediated
Gene trapped
Targeted
Find Mice (IMSR)

Gene Ontology
(GO)
Classifications

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All GO Annotations
GO References

Molecular Function No experimental evidence to support Molecular Function annotation, following literature review. See J:73796. Biological Process No experimental evidence to support Biological Process annotation, following literature review. See J:73796. Cellular Component cell projection cytoplasmic vesicle cytoskeleton cytosol endoplasmic reticulum endosome extracellular region Golgi apparatus mitochondrion membraneless organelle nucleus organelle envelope organelle lumen plasma membrane protein-containing complex synapse vacuole Click cells to view annotations.

Expression

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results
Tissues
cDNA Data
Literature Summary
Other Mouse Links
Other Vertebrate Links

Sequences &
Gene Models

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All Sequences
RefSeq
UniProt
CCDS
Ensembl
NCBI Gene

Protein
Information

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UniProt
5 Sequences
Protein Ontology
PR:000015662 translocon-associated protein subunit delta
InterPro Domains
GlyGen
Q62186 1 site, 1 O-linked glycan (1 site)

Molecular
Reagents

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All nucleic 161
Genomic 1
Other 1
Microarray probesets 5

Other
Accession IDs

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MGI:2148027, MGI:2148055

References

Summaries
Developmental Gene Expression 1
Gene Ontology 6
Phenotypes 6
Earliest
J:42694 Holthuis JC, et al., Translocon-associated protein TRAP delta and a novel TRAP-like protein are coordinately expressed with pro-opiomelanocortin in Xenopus intermediate pituitary. Biochem J. 1995 Nov 15;312(Pt 1):205-13
Latest
J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582