Journal of Biomedical Semantics (original) (raw)
Editors-in-Chief
Robert Hoehndorf, King Abdullah University of Science and Technology, Saudi Arabia
Founding Editor-in-Chief:
Dietrich Rebholz-Schuhmann, ZB Med, Germany
Aims and scope
Journal of Biomedical Semantics addresses issues of semantic enrichment and semantic processing in the biomedical and clinical domain. The scope of the journal covers two main areas:
Infrastructure for biomedical semantics: focusing on semantic resources and repositories, ontology design, meta-data standardsandmanagement, resource description, knowledge representation and semantic frameworks, the Biomedical Semantic Web, and semantic interoperability.
Semantic mining, annotation, and analysis: focusing on approaches and applications of semantic resources; and tools for investigation, reasoning, prediction, artificial intelligence modelling, and discoveries in biomedicine.
Open Collections
International Conference on Biomedical Ontologies (ICBO)
Journal of Biomedical Semantics
Edited by: Karin Slater & Robert Hoehndorf
2022
International Society of Molecular Biology (ISMB) Bio-Ontologies Community of Special Interest
Journal of Biomedical Semantics
Edited by: Tiffany Callahan & Maxat Kulmanov
Data and Research Objects Planning and Management for Linked Open Science (DaMaLOS)
Journal of Biomedical Semantics
Edited by: Leyla Jael Garcia-Castro & Nuria Queralt-Rosinach
Articles
Authors: Julien Ehrsam, Christophe Gaudet-Blavignac, Mirjam Mattei, Monika Baumann and Christian Lovis
Content type: Research 27 March 2025
2. ### Digital evolution: Novo Nordisk’s shift to ontology-based data management
Authors: Shawn Zheng Kai Tan, Shounak Baksi, Thomas Gade Bjerregaard, Preethi Elangovan, Thrishna Kuttikattu Gopalakrishnan, Darko Hric, Joffrey Joumaa, Beidi Li, Kashif Rabbani, Santhosh Kannan Venkatesan, Joshua Daniel Valdez and Saritha Vettikunnel Kuriakose
Content type: Research 22 March 2025
3. ### Standardizing free-text data exemplified by two fields from the Immune Epitope Database
Content type: Research 22 March 2025
4. ### New and revised gene ontology biological process terms describe multiorganism interactions critical for understanding microbial pathogenesis and sequences of concern
Authors: Gene Godbold, Jody Proescher and Pascale Gaudet
Content type: Research 21 March 2025
5. ### Enriched knowledge representation in biological fields: a case study of literature-based discovery in Alzheimer’s disease
Authors: Yiyuan Pu, Daniel Beck and Karin Verspoor
Content type: Research 20 March 2025
Authors: Joanne S Luciano, Bosse Andersson, Colin Batchelor, Olivier Bodenreider, Tim Clark, Christine K Denney, Christopher Domarew, Thomas Gambet, Lee Harland, Anja Jentzsch, Vipul Kashyap, Peter Kos, Julia Kozlovsky, Timothy Lebo, Scott M Marshall, Jamie P McCusker…
Content type: Proceedings 17 May 2011
2. ### Semantic querying of relational data for clinical intelligence: a semantic web services-based approach
Authors: Alexandre Riazanov, Artjom Klein, Arash Shaban-Nejad, Gregory W Rose, Alan J Forster, David L Buckeridge and Christopher JO Baker
Content type: Research 13 March 2013
3. ### Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon
Authors: Melissa A Haendel, James P Balhoff, Frederic B Bastian, David C Blackburn, Judith A Blake, Yvonne Bradford, Aurelie Comte, Wasila M Dahdul, Thomas A Dececchi, Robert E Druzinsky, Terry F Hayamizu, Nizar Ibrahim, Suzanna E Lewis, Paula M Mabee, Anne Niknejad, Marc Robinson-Rechavi…
Content type: Research 19 May 2014
4. ### The Semantic Automated Discovery and Integration (SADI) Web service Design-Pattern, API and Reference Implementation
Authors: Mark D Wilkinson, Benjamin Vandervalk and Luke McCarthy
Content type: Database 24 October 2011
5. ### MeSH Now: automatic MeSH indexing at PubMed scale via learning to rank
Authors: Yuqing Mao and Zhiyong Lu
Content type: Research 17 April 2017