Clustering of Missense Mutations in the C-Terminal Region of Factor H in Atypical Hemolytic Uremic Syndrome (original) (raw)

Abstract

Hemolytic-uremic syndrome (HUS) is a microvasculature disorder leading to microangiopathic hemolytic anemia, thrombocytopenia, and acute renal failure. Most cases of HUS are associated with epidemics of diarrhea caused by verocytotoxin-producing bacteria, but atypical cases of HUS not associated with diarrhea (aHUS) also occur. Early studies describing the association of aHUS with deficiencies of factor H suggested a role for this complement regulator in aHUS. Molecular evidence of factor H involvement in aHUS was first provided by Warwicker et al., who demonstrated that aHUS segregated with the chromosome 1q region containing the factor H gene (HF1) and who identified a mutation in HF1 in a case of familial aHUS with normal levels of factor H. We have performed the mutational screening of the HF1 gene in a novel series of 13 Spanish patients with aHUS who present normal complement profiles and whose plasma levels of factor H are, with one exception, within the normal range. These studies have resulted in the identification of five novel HF1 mutations in four of the patients. Allele HF1Δexon2, a genomic deletion of exon 2, produces a null HF1 allele and results in plasma levels of factor H that are 50% of normal. T956M, W1183L, L1189R, and V1197A are missense mutations that alter amino acid residues in the C-terminal portion of factor H, within a region—SCR16–SCR20—that is involved in the binding to solid-phase C3b and to negatively charged cellular structures. This remarkable clustering of mutations in HF1 suggests that a specific dysfunction in the protection of cellular surfaces by factor H is a major pathogenic condition underlying aHUS.


Hemolytic uremic syndrome (HUS) is a common cause of acute renal failure in children, leading to substantial morbidity and mortality (reviewed in Ruggenenti and Remuzzi 1998). HUS is characterized by a triad of symptoms—microangiopathic hemolytic anemia, thrombocytopenia and acute renal failure. Typical, epidemic or diarrhea-associated HUS is most common in infants and young children. In the majority of the cases, it is associated with the 0157:H7 strain of Escherichia coli, which produces a powerful exotoxin (either verocytotoxin or verotoxin). Other possible triggers of the disease are viruses and neuraminidase-producing microorganisms. The outcome of these patients is usually good, with a complete recovery of renal function within 2 or 3 wk. Atypical, non–diarrhea-associated HUS (aHUS) is most common in older children and adults. The prognosis is poorer than that in typical HUS, with a high (10%–30%) mortality. Renal involvement is a constant feature, and up to 50% of patients may need dialysis. Neurological symptoms are also common, and sequelae may persist for several years. Most cases of aHUS are idiopathic, but predisposing factors such as anticancer drugs, immunosuppressive agents, or oral contraceptives have been reported. aHUS can also develop during either the third trimester of pregnancy or the postpartum period, as well as in association with anti-endothelial antibodies. Although most cases are sporadic, familial cases of aHUS have been described. In these cases, both autosomal dominant (MIM 134370) and recessive (MIM 235400) modes of inheritance have been reported.

A number of observations, including the recurrence of the disease in transplanted individuals and the positive response to plasma exchange in some patients, have pointed to the involvement of a plasma factor in the etiology of aHUS. These facts, together with early reports describing the association of aHUS with deficiencies of the plasma protein factor H (Thompson and Winterborn 1981; Pichette et al. 1994; Ohali et al. 1998; Rougier et al. 1998), led to the decisive linkage studies by Warwicker et al. 1998, later confirmed by Ying et al. 1999, revealing that the disease segregates with a chromosome 1q32 region that includes the gene encoding factor H (HF1). Furthermore, in one of the families with aHUS that are included in these linkage studies, a missense mutation that had no effect on the levels of factor H was found in the HF1 gene, strongly supporting a role for factor H in the pathogenesis of aHUS.

Factor H is a plasma protein (molecular mass 155,000 daltons) composed of 20 repetitive units of 60 amino acids called “short consensus repeats” (SCR) (Ripoche et al. 1988), also known as “complement control protein” (also known as “CCP”) modules. Factor H is encoded by a single gene located on human chromosome 1q32, within the RCA (regulators of complement activation) gene cluster (Rodríguez de Córdoba et al. 1985; Weis et al. 1987). Five additional factor H–related human plasma proteins have been identified and shown to be encoded by five genes, FHR1_–_FHR5, closely linked to the HF1 gene (Zipfel and Skerka 1994; Zipfel et al. 1999; Rodríguez de Córdoba et al. 1999; McRae et al. 2000). Factor H controls activation of the alternative pathway of complement in fluid phase and on cellular surfaces. It binds to C3b, accelerates the decay of the alternative-pathway C3-convertase and acts as a cofactor for the factor I–mediated proteolytic inactivation of C3b (Weiler et al. 1976; Whaley and Ruddy 1976; Pangburn et al. 1977). Factor H can also interact with polyanionic molecules (sialic acids or glycosaminoglycans) on certain cellular surfaces, conferring to them resistance to damage as a consequence of complement activation through the alternative pathway (Meri and Pangburn 1990; Pangburn et al. 1991). Complete factor H deficiency leads to a situation of hypocomplementemia that increases the risk of infection by pathogens and that is usually associated with recurrent infections by pyogenic microorganisms. In addition, deficiency of factor H has been associated with systemic lupus ertythematosis, type II membrane-proliferative glomerulonephritis, collagen type III glomerulopathy, and, as indicated above, familial HUS (reviewed in Ault 2000).

To get further insight into the genetic relationship between aHUS and factor H, we have performed mutational screening of HF1 in a novel series of patients with aHUS. These studies have been facilitated by previous work in our laboratory, related both to the organization of the HF1/FHR1–FHR5 region of the RCA gene cluster and to the structure of the human HF1 gene. Figure 1_a_ summarizes the organization of the 1q32 genomic region containing the human HF1 gene and FHR1–FHR5 genes (for genomic sequences of HF1 and of FHR1–FHR5, see the Entrez Nucleotide Sequence Search Web site). Besides showing the exon/intron organization of the genes within this region, figure 1_a_ also illustrates the existence of a number of large genomic duplications (1.2–38 kb long; 85%–97% identity) including different exons of the HF1/FHR1–FHR5 genes. Since two of these genomic duplications include exons 8/9 and exons 21–23, respectively, of the HFI gene, we took special care in the design of the PCR primers used to amplify these HF1 exons, so that homologous exons in either the FHR1 gene or the FHR3 gene would not be amplified. Table 1 shows the primer sequences and PCR conditions that we have used to amplify each of the exons of the HF1 gene from genomic DNA.

Figure 1.

Figure  1

Mutations in factor H in patients with aHUS. a, Organization of the 1q32 genomic region containing the human HF1 gene. Colored arrows indicate the location and transcriptional orientation of the HF1 gene and the FHR1–FHR5 genes. For each gene, the exon/intron organization is indicated by vertical bars. Genomic duplications within the region are indicated by colored boxes. These duplications are 1.2–38 kb in size and present a pairwise nucleotide identity of 85%–97%. The exon/intron organization of the HF1 gene, as well as the nucleotide sequences of the intronic flanking regions, was determined on the basis of data published by Male et al. (2000) and of data generated in our laboratory by PCR analysis and sequencing of PAC clones RPCIP704A14355, RPCIP704L20665, RPCIP704M03650, RPCIP704O14608 (authors' unpublished data). These data and sequence data generated by the Human Genome Project (clones AL049741, AL049744, AL139418, and AL353809) provided the genomic sequence for the HF1 gene and the FHR1–FHR5 genes. HF1 comprises 23 exons and spans >94 kb of genomic DNA. Exon 10 does not contribute to the factor H transcript; it is utilized only in the alternative HF1 transcript that codes for the factor H–like 1 molecule (also known as “FHL-1”) (Estaller et al. 1991). To amplify each of the HF1 exons present in the factor H transcript, we designed PCR primers to the intronic flanking sequences (table 1). Primers for exons 8/9 and 21–23 were designed to avoid amplification of homologous exons in the FHR3 gene and the FHR1 gene, respectively. b, Identification of mutations in the factor H gene in four patients with aHUS. The pedigrees of patients HUS2, HUS3, HUS11, and HUS12 are shown, as are the chromatograms corresponding to the DNA sequence surrounding the mutated nucleotide for each patient and family members studied. The positions of nucleotide changes are according to the cDNA sequence reported by Ripoche et al. (1988). The ATG initiation codon is located at nucleotide position c.74. Amino acid numbering includes the signal peptide. c, Functional domains and mutations in the factor H molecule. A diagram of the structure of human factor H with the 20 SCR repeats is shown. Functional domains are indicated schematically. The location of the six missense mutations thus far characterized in patients with aHUS (four of whom reported here) is indicated to illustrate that they are clustered within a specific region of factor H, a region that has been reported to be important for the control of C3b deposited on surfaces.

Table 1.

PCR Primers for Mutational Analysis of HF1

Primer(5′→3′)
Exon Protein Region Forward Reverse Fragment Sizea(bp)
1 Signal peptide GACGTTGTGAACAGAGTTAGCTG ACTCCTGTGAAAAGCATCATTAG 181
2 SCR1 GTACATTTAAATAGACACTTTATGC TACACCTAGTTTTCATAAATTTCAC 281
3 SCR2A CCCACTCCTACATAAAATATATTCC CCTATTTACTATCTTAATTATAAACC 171
4 SCR2B TAAACACACATTATGTCAACGTTC GAGAC TTTAAGATATTTTAATGTAAG 206
5 SCR3 TACATACACATATTTTTCACAATAAAC GCAAAAATACTAAAACAGTAAGTG 294
6 SCR4 CCTTTAATTTGCAATAAACATTTTGG TATGTGATAAATTTATAAAGATCCAG 263
7 SCR5 CGGATACTTATTTCTGCATTATCC AAATTTCAGAATTAAGAAATGGGTC 264
8 SCR6 GTTTATTACAGTAAAATTTCTTTATAC CTTCGATCTTTGAAAGTTTTATAC 300
9 SCR7 TGAGCAAATTTATGTTTCTCATTTAC TTAGAAAGACATGAACATGCTAGG 279
11 SCR8 AAAATGTTATTGATCATATGCTTGTC ACTTTTGTGTATCATCTGGATAATC 284
12 SCR9 GTTTATTAGATGACATTAGAAATGAC GGAAAACAGATTTATTTTCATTTTG 280
13 SCR10 TTGGCAATGATTAATTATATATTCTC TCAAAGTTCTAATTCTTATTTCAGC 274
14 SCR11 TATATTGTAAAACAGACAATTTAACC ATACAAAATACAAAAGTTTTGACAAG 289
15 SCR12 AAAACACATACATCATGTTTTCAC GTTGTTACAATAAAAATATTAAACTTTG 292
16 SCR13 AGTTGGTTTGATTCCTATCATTTG ACACACATACCTATTACTTTTCC 277
17 SCR14 ATATTTTTATTTTTTATTTTTTATTATAAC TATTAACCTCATTTGAAAGAATTATG 290b
18 SCR15 GTATTTTATTTGTTTTTAACCCTTTG ATGAATTCTACTATAAACAGAAATTG 277
19 SCR16 TAAATTTATGAGTTAGTGAAACCTG TGGTACCACTTACACTTTGAATG 272
20 SCR17 TTTTAAAGATTTGCGGAACAAATAC CCCACACATTATATAAATAAATTTTG 263
21 SCR18 TTGCTACTCAAAATGAACACTAGG CCTGCTATACTCCCCCAAAATG 274
22 SCR19 TTGTATTTTGATTTGCTCTCACAAC GTGAAATATCAGACTCATCACAGA 296
23 SCR20 ATTTGCATACTACTTAATGTTTTATG AGTTCTGAATAAAGGTGTGCAC 284c

Patients included in these studies were selected on the basis of a single criterion: presenting a clinical history of HUS of non–diarrhea-associated origin. Chronic renal failure and/or unsuccessful renal transplantation led most of them to hemodialysis. Twelve of the patients have no family history of HUS. In only one of the probands, HUS11, the death of the mother, as a consequence of postpartum aHUS, was reported. Our patients have a normal complement profile, and, with the only exception of HUS3, they all present with normal plasma levels of factor H, as determined by ELISA and semiquantitative western blot analyses (table 2). The mutational analysis of the HF1 gene was performed in genomic DNA from these patients and their available relatives, by both SSCP analysis and automatic DNA sequencing of the HF1 exons. In several of our patients, HF1 sequences were also obtained by reverse transcriptase–PCR using total RNA obtained from peripheral blood lymphocytes, as described elsewhere (Sánchez-Corral et al. 2000).

Table 2.

Complement Profiles and Factor H Levels in Patients with aHUS

Patient(Age [years]) Clinical History CH50a AP50b C3c(mg/100 ml) C4c(mg/100 ml) Factor Hd(μg/100 ml)
HUS2 (23) Chronic renal failure, transplanted twice Normal Normal 71.2 30 1,158
HUS3 (53) Chronic renal failure, hemodialysis Normal Low 59.2 26.3 109e
HUS5 (4) Three HUS episodes, neurological symptoms Normal Normal 112 15 350
HUS8 (12) Neurological symptoms Normal Normal 96.5 30.3 501
HUS9 (10) Two HUS episodes, neurological symptoms Normal Normal 113 23.5 286
HUS10 (10) One HUS episode Normal Normal 94.1 17 484
HUS11 (12) Transplanted twice, deceased Normal Normal 167 53 1,225
HUS12 (13) One HUS episode Normal Normal 135 27.2 821
HUS13 (10) Transplanted, hemodialysis Normal Normal 86.5 10.6 546
HUS14 (21) Cyclosporin related, chronic renal failure, transplanted Normal Normal 84 24.4 195
HUS15 (17) Cyclosporin related, chronic renal failure, transplanted Normal Normal 96.2 19.5 483
HUS16 (2) One HUS episode Normal Normal 90.8 15.5 1,052
HUS18 (10) One HUS episode Normal Normal 109 15.7 320

In 4 of the 13 patients with aHUS, we identified HF1 mutations that were not found in a sample of >100 population-matched HF1 control chromosomes (fig. 1_b_). Patient HUS2 is heterozygous for a G→T substitution at HF1 nucleotide position c.3621 in exon 23. This mutation results in a tryptophan-to-leucine change, W1183L, in SCR20. No mutations were found in the other HF1 chromosome. The W1183L mutation was identified both in genomic DNA and in RNA obtained from the lymphocytes of the patient, but not in either the DNA or the mRNA obtained from his parents, indicating that it is a de novo mutation. Patient HUS3 presented a T→C substitution at nucleotide position c.3663 in exon 23, apparently in homozygosis. This mutation changes the amino acid valine 1197 to alanine in factor H SCR20. No additional mutations to V1197A were found in HUS3. Since levels of factor H in HUS3 were half of normal levels, and since she was also found to be homozygous at c. 257, c.994, c.1277, c.1492, c.1551, c.2089, c.2881, and c.3705 HF1 polymorphic sites (to be described elsewhere), we set up experiments to determine whether she carries a genomic deletion in HF1 in heterozygosis. Segregation analysis of HF1 polymorphisms in her son demonstrated that she carries a null allele at the c.257 polymorphic site in exon 2 (coding for SCR1), indicating a partial deletion of the HF1 gene in one of her chromosomes. Although the precise length of the deletion has not been established, we conclude that this deletion results in a null HF1 allele (HF1Δexon2) that is not transcribed into mRNA. Patient HUS3 was, therefore, interpreted to be an HF1 hemizygote who, in addition, carries the V1197A mutation in her only functional HF1 allele. Since the nucleotide change involved in the V1197A mutation is one of the two nucleotide differences that distinguish HF1 exon 23 from FHR1 exon 6, within the large genomic duplication involving the 3′ end of these two genes (fig. 1_a_), we suggest that the V1197A mutation could have originated via a gene-conversion event between HF1 and FHR1.

DNA sequence analysis of HF1 demonstrated that a third patient, HUS11, is heterozygous for a T→G substitution at HF1 nucleotide position c.3639 in exon 23. This mutation results in a leucine-to-arginine change, L1189R, in SCR20. The mutation was not found in the father of the patient, suggesting a maternal origin. However, DNA from the mother, who had died of postpartum HUS, was not available. Finally, in a fourth patient, HUS12, HF1 mutational analysis demonstrated a C→T substitution in heterozygosis at nucleotide position c.2940 in exon 19. This change results in a threonine-to-methionine change, T956M, in SCR16. Analysis of the DNA from the parents of HUS12 revealed that the mother also carries the T956M mutation in heterozygosis. No mutations in HF1 were found in the remaining nine patients with aHUS, by either SSCP or DNA sequencing analyses.

Different strategies, involving the use of monoclonal antibodies, enzymatic digestion, or deletion mutagenesis, have allowed the identification and characterization of distinct functional domains in the factor H molecule, although it has not been exactly determined which amino acid residues are responsible for these functions (Alsenz et al. 1985; Gordon et al. 1995; Kühn et al. 1995; Jokiranta et al. 1996; Prodinger et al. 1998). Figure 1_c_ depicts schematically some of these functional domains. Factor H has three binding sites for C3b—in SCR1–SCR4, SCR6–SCR10, and SCR16–SCR20. The C3b-binding site in SCR1–SCR4 is the only site essential for the cofactor activity with factor I, but deletion of any of the C3b-binding sites significantly decreases factor H binding to C3b deposited on cellular surfaces (Sharma and Pangburn 1996). In addition, figure 1_c_ illustrates that SCR7, SCR13, and SCR16–SCR20 have been found to contain heparin- and sialic acid–binding sites (Pangburn et al. 1991; Blackmore et al. 1996, 1998; Ram et al. 1998).

The T956M, W1183L, L1189R, and V1197A mutations identified in this study alter the amino acid sequence of the factor H molecule without apparently affecting the normal secretion of the protein into plasma (table 2) (for the factor H sequence, see Entrez Nucleotide Sequence Search). One of these mutations lies in SCR16, and the other three in SCR20, the most C-terminal domain of factor H. There are only two other cases of aHUS that have normal levels of factor H and in which mutations in HF1 have been previously identified, and, most interesting, in both cases the mutations (R1215G and R1210C) also lie in SCR20 (Warwicker et al. 1998; Caprioli et al. 2000). The clustering of missense mutations in the SCR16–SCR20 domains of factor H in patients with aHUS contrasts with the random distribution of (1) HF1 mutations in individuals with factor H deficiency (Ault et al. 1997; Warwicker et al. 1998; Buddles et al. 2000; Sánchez-Corral et al. 2000) and (2) the HF1 single-nucleotide polymorphisms thus far described (see above), strongly suggesting a genotype-phenotype correlation in aHUS, which points to the involvement, in the pathogenesis of this disease, of a specific dysfunction in the C-terminal region of factor H.

Although the relative contributions of SCR16 and SCR20 to the functional map of factor H have not been established, it is clear that both SCRs are part of a region that is involved in the binding to solid-phase C3b and to negatively charged cellular structures (such as sialic acid)—and that this region contributes significantly to the capacity of factor H to control activation of the complement system on certain cellular surfaces (Pangburn et al. 2000). Therefore, it is likely that the SCR16–SCR20 mutations found in patients with aHUS result in a defective protection of cellular surfaces by factor H. On the other hand, the T956M, W1183L, L1189R, and V1197A mutations should not alter the cofactor activity of factor H in the fluid phase, which is in agreement with the normal complement activity and C3 levels observed in our patients with aHUS. It is noticeable that in patients HUS2, HUS11, and HUS12 the levels of factor H are considerably elevated. Whether this situation results from an increased transcription of the HF1 gene or is a consequence of a low turnover of the mutated protein in plasma remains to be determined.

Thus far, two types of mutations in factor H have been observed in patients with aHUS: null HF1 alleles resulting in decreased levels of factor H and missense mutations in the SCR16–SCR20 region. Interestingly, one of our patients with aHUS (i.e., HUS3) carries both an HF1 null allele and the V1197A mutation in her only functional HF1 copy, which suggests that, in some cases, both decreased levels of factor H and mutations in SCR16–SCR20 may be necessary to produce pathologically significant dysfunction of factor H. In this regard, it should be interesting to reevaluate the previously described cases of aHUS that have decreased levels of factor H, in a search for additional HF1 missense mutations.

As indicated above, nine of our patients with aHUS have no mutations in HF1 and present normal levels of factor H in plasma. Experiments to further characterize the activity of factor H in the sera of these patients, including the search for potential plasma components that may interfere with the role of factor H in controlling the surface activation of the complement system, would be needed before involvement of factor H can be excluded from the pathogenesis of aHUS in these patients.

Our patients with aHUS who have missense mutations in the SCR16–SCR20 region are HF1 heterozygotes, which make difficult the purification and analysis of the mutant factor H proteins. Functional characterization of these mutations in recombinant factor H molecules would be needed to confirm that, in patients with aHUS, there is a defective control, by factor H, of the activation of the complement system on cellular surfaces. If this hypothesis is correct, administration of exogenous, functionally active factor H may become a successful therapeutic approach for a significant number of patients with aHUS.

Acknowledgments

We thank the families with aHUS and all the clinicians, particularly Drs. Ángel Alonso and Mª Auxiliadora Bajo, for their collaboration and donation of blood samples. We would also like to thank S. Vara de Rey, D. Beltrán Valero de Bernabé, L. Gulliksen, and the DNA Sequencing Laboratory at the Centro de Investigaciones Biológicas, for their contribution to this work. We also thank the reviewers of the manuscript, for their helpful comments. This research was supported by Spanish Fondo de Investigaciones Sanitarias grant FIS 98/0687, Comisión Interministerial de Ciencia y Tecnología grant SAF-99/0013-C02-01, and Comunidad de Madrid grants 08.1/0008/1998 and 08.6/0028/2000. D.P.-C. and P.S.-C. have been awarded grants from Glaxo Wellcome/CSIC and the Comunidad de Madrid, respectively.

Electronic-Database Information

Accession numbers and URLs for data in this article are as follows:

  1. Entrez Nucleotide Sequence Search, http://www.ncbi.nlm.nih.gov/Entrez/nucleotide.html (for factor H cDNA sequence [accession number Y00716] and genomic sequences of the HF1 gene and the FHR1–FHR5 genes [accession numbers AL049744, AL049741, AL139418, and AL353809])
  2. Online Mendelian Inheritance in Man (OMIM), http://www.ncbi.nlm.nih.gov/Omim (for autosomal dominant [MIM 134370] and recessive [MIM 235400] HUS)

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