Compilation and analysis of Escherichia coli promoter DNA sequences (original) (raw)

Abstract

The DNA sequence of 168 promoter regions (-50 to +10) for Escherichia coli RNA polymerase were compiled. The complete listing was divided into two groups depending upon whether or not the promoter had been defined by genetic (promoter mutations) or biochemical (5' end determination) criteria. A consensus promoter sequence based on homologies among 112 well-defined promoters was determined that was in substantial agreement with previous compilations. In addition, we have tabulated 98 promoter mutations. Nearly all of the altered base pairs in the mutants conform to the following general rule: down-mutations decrease homology and up-mutations increase homology to the consensus sequence.

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Selected References

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  1. Abraham J., Mascarenhas D., Fischer R., Benedik M., Campbell A., Echols H. DNA sequence of regulatory region for integration gene of bacteriophage lambda. Proc Natl Acad Sci U S A. 1980 May;77(5):2477–2481. doi: 10.1073/pnas.77.5.2477. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Aiba H., Adhya S., de Crombrugghe B. Evidence for two functional gal promoters in intact Escherichia coli cells. J Biol Chem. 1981 Nov 25;256(22):11905–11910. [PubMed] [Google Scholar]
  3. Aiba H., Fujimoto S., Ozaki N. Molecular cloning and nucleotide sequencing of the gene for E. coli cAMP receptor protein. Nucleic Acids Res. 1982 Feb 25;10(4):1345–1361. doi: 10.1093/nar/10.4.1345. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Altman S., Smith J. D. Tyrosine tRNA precursor molecule polynucleotide sequence. Nat New Biol. 1971 Sep 8;233(36):35–39. doi: 10.1038/newbio233035a0. [DOI] [PubMed] [Google Scholar]
  5. An G., Friesen J. D. Characterization of promoter-cloning plasmids: analysis of operon structure in the rif region of Escherichia coli and isolation of an enhanced internal promoter mutant. J Bacteriol. 1980 Dec;144(3):904–916. doi: 10.1128/jb.144.3.904-916.1980. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. An G., Friesen J. D. The nucleotide sequence of tufB and four nearby tRNA structural genes of Escherichia coli. Gene. 1980 Dec;12(1-2):33–39. doi: 10.1016/0378-1119(80)90013-x. [DOI] [PubMed] [Google Scholar]
  7. Auerswald E. A., Ludwig G., Schaller H. Structural analysis of Tn5. Cold Spring Harb Symp Quant Biol. 1981;45(Pt 1):107–113. doi: 10.1101/sqb.1981.045.01.019. [DOI] [PubMed] [Google Scholar]
  8. Barker D. F., Kuhn J., Campbell A. M. Sequence and properties of operator mutations in the bio operon of Escherichia coli. Gene. 1981 Jan-Feb;13(1):89–102. doi: 10.1016/0378-1119(81)90046-9. [DOI] [PubMed] [Google Scholar]
  9. Beck E., Bremer E. Nucleotide sequence of the gene ompA coding the outer membrane protein II of Escherichia coli K-12. Nucleic Acids Res. 1980 Jul 11;8(13):3011–3027. doi: 10.1093/nar/8.13.3011. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Beck E., Zink B. Nucleotide sequence and genome organisation of filamentous bacteriophages fl and fd. Gene. 1981 Dec;16(1-3):35–58. doi: 10.1016/0378-1119(81)90059-7. [DOI] [PubMed] [Google Scholar]
  11. Bedouelle H., Hofnung M. A DNA sequence containing the control regions of the malEFG and malK-lamB operons in Escherichia coli K12. Mol Gen Genet. 1982;185(1):82–87. doi: 10.1007/BF00333794. [DOI] [PubMed] [Google Scholar]
  12. Bedouelle H., Schmeissner U., Hofnung M., Rosenberg M. Promoters of the malEFG and malK-lamB operons in Escherichia coli K12. J Mol Biol. 1982 Nov 15;161(4):519–531. doi: 10.1016/0022-2836(82)90405-3. [DOI] [PubMed] [Google Scholar]
  13. Bennett G. N., Schweingruber M. E., Brown K. D., Squires C., Yanofsky C. Nucleotide sequence of the promoter--operator region of the tryptophan operon of Escherichia coli. J Mol Biol. 1978 May 15;121(2):113–137. doi: 10.1016/s0022-2836(78)80001-1. [DOI] [PubMed] [Google Scholar]
  14. Berman M. L., Landy A. Promoter mutations in the transfer RNA gene tyrT of Escherichia coli. Proc Natl Acad Sci U S A. 1979 Sep;76(9):4303–4307. doi: 10.1073/pnas.76.9.4303. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Blattner F. R., Dahlberg J. E. RNA synthesis startpoints in bacteriophage lambda: are the promoter and operator transcribed? Nat New Biol. 1972 Jun 21;237(77):227–232. doi: 10.1038/newbio237227a0. [DOI] [PubMed] [Google Scholar]
  16. Brosius J., Cate R. L., Perlmutter A. P. Precise location of two promoters for the beta-lactamase gene of pBR322. S1 mapping of ribonucleic acid isolated from Escherichia coli or synthesized in vitro. J Biol Chem. 1982 Aug 10;257(15):9205–9210. [PubMed] [Google Scholar]
  17. Brosius J., Dull T. J., Sleeter D. D., Noller H. F. Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli. J Mol Biol. 1981 May 15;148(2):107–127. doi: 10.1016/0022-2836(81)90508-8. [DOI] [PubMed] [Google Scholar]
  18. Busby S., Aiba H., de Crombrugghe B. Mutations in the Escherichia coli operon that define two promoters and the binding site of the cyclic AMP receptor protein. J Mol Biol. 1982 Jan 15;154(2):211–227. doi: 10.1016/0022-2836(82)90061-4. [DOI] [PubMed] [Google Scholar]
  19. Calos M. P. DNA sequence for a low-level promoter of the lac repressor gene and an 'up' promoter mutation. Nature. 1978 Aug 24;274(5673):762–765. doi: 10.1038/274762a0. [DOI] [PubMed] [Google Scholar]
  20. Cech C. L., Lichy J., McClure W. R. Characterization of promoter containing DNA fragments based on the abortive initiation reaction of Escherichia coli RNA polymerase. J Biol Chem. 1980 Mar 10;255(5):1763–1766. [PubMed] [Google Scholar]
  21. Cesareni G. The RNA primer promoter, as defined in vitro, is essential for pMB1 plasmid replication in vivo. J Mol Biol. 1982 Sep;160(1):123–126. doi: 10.1016/0022-2836(82)90135-8. [DOI] [PubMed] [Google Scholar]
  22. Chan P. T., Lebowitz J., Bastia D. Nucleotide sequence determination of a strong promoter of the colicin E 1 plasmid. Analysis of restriction sites protected by RNA polymerase interactions before and after limited transcription. Nucleic Acids Res. 1979 Nov 10;7(5):1247–1262. doi: 10.1093/nar/7.5.1247. [DOI] [PMC free article] [PubMed] [Google Scholar]
  23. Chapon C. Expression of malT, the regulator gene of the maltose region in Escherichia coli, is limited both at transcription and translation. EMBO J. 1982;1(3):369–374. doi: 10.1002/j.1460-2075.1982.tb01176.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  24. Csordás-Tóth E., Boros I., Venetianer P. Structure of the promoter region for the rrnB gene in Escherichia coli. Nucleic Acids Res. 1979 Dec 20;7(8):2189–2197. doi: 10.1093/nar/7.8.2189. [DOI] [PMC free article] [PubMed] [Google Scholar]
  25. Dahlberg J. E., Blattner F. R. Sequence of the promoter-operator proximal region of the major leftward RNA of bacteriophage lambda. Nucleic Acids Res. 1975 Sep;2(9):1441–1458. doi: 10.1093/nar/2.9.1441. [DOI] [PMC free article] [PubMed] [Google Scholar]
  26. Davies R. W. DNA sequence of the int-xis-Pi region of the bacteriophage lambda; overlap of the int and xis genes. Nucleic Acids Res. 1980 Apr 25;8(8):1765–1782. doi: 10.1093/nar/8.8.1765. [DOI] [PMC free article] [PubMed] [Google Scholar]
  27. Davies W. D., Davidson B. E. The nucleotide sequence of aroG, the gene for 3-deoxy-D-arabinoheptulosonate-7-phosphate synthetase (phe) in Escherichia coli K12. Nucleic Acids Res. 1982 Jul 10;10(13):4045–4058. doi: 10.1093/nar/10.13.4045. [DOI] [PMC free article] [PubMed] [Google Scholar]
  28. Debarbouille M., Cossart P., Raibaud O. A DNA sequence containing the control sites for gene malT and for the malPQ operon. Mol Gen Genet. 1982;185(1):88–92. doi: 10.1007/BF00333795. [DOI] [PubMed] [Google Scholar]
  29. Deeley M. C., Yanofsky C. Nucleotide sequence of the structural gene for tryptophanase of Escherichia coli K-12. J Bacteriol. 1981 Sep;147(3):787–796. doi: 10.1128/jb.147.3.787-796.1981. [DOI] [PMC free article] [PubMed] [Google Scholar]
  30. Deeley M. C., Yanofsky C. Transcription initiation at the tryptophanase promoter of Escherichia coli K-12. J Bacteriol. 1982 Aug;151(2):942–951. doi: 10.1128/jb.151.2.942-951.1982. [DOI] [PMC free article] [PubMed] [Google Scholar]
  31. Dickson R. C., Abelson J., Barnes W. M., Reznikoff W. S. Genetic regulation: the Lac control region. Science. 1975 Jan 10;187(4171):27–35. doi: 10.1126/science.1088926. [DOI] [PubMed] [Google Scholar]
  32. Duester G., Campen R. K., Holmes W. M. Nucleotide sequence of an Escherichia coli tRNA (Leu 1) operon and identification of the transcription promoter signal. Nucleic Acids Res. 1981 May 11;9(9):2121–2139. doi: 10.1093/nar/9.9.2121. [DOI] [PMC free article] [PubMed] [Google Scholar]
  33. Dunn J. J., Studier F. W. Nucleotide sequence from the genetic left end of bacteriophage T7 DNA to the beginning of gene 4. J Mol Biol. 1981 Jun 5;148(4):303–330. doi: 10.1016/0022-2836(81)90178-9. [DOI] [PubMed] [Google Scholar]
  34. Ebina Y., Kishi F., Miki T., Kagamiyama H., Nakazawa T., Nakazawa A. The nucleotide sequence surrounding the promoter region of colicin E1 gene. Gene. 1981 Nov;15(2-3):119–126. doi: 10.1016/0378-1119(81)90121-9. [DOI] [PubMed] [Google Scholar]
  35. Eisenbeis S. J., Parker J. The nucleotide sequence of the promoter region of hisS, the structural gene for histidyl-tRNA synthetase. Gene. 1982 May;18(2):107–114. doi: 10.1016/0378-1119(82)90108-1. [DOI] [PubMed] [Google Scholar]
  36. Friden P., Newman T., Freundlich M. Nucleotide sequence of the ilvB promoter-regulatory region: a biosynthetic operon controlled by attenuation and cyclic AMP. Proc Natl Acad Sci U S A. 1982 Oct;79(20):6156–6160. doi: 10.1073/pnas.79.20.6156. [DOI] [PMC free article] [PubMed] [Google Scholar]
  37. Frunzio R., Bruni C. B., Blasi F. In vivo and in vitro detection of the leader RNA of the histidine operon of Escherichia coli K-12. Proc Natl Acad Sci U S A. 1981 May;78(5):2767–2771. doi: 10.1073/pnas.78.5.2767. [DOI] [PMC free article] [PubMed] [Google Scholar]
  38. Gardner J. F. Initiation, pausing, and termination of transcription in the threonine operon regulatory region of Escherichia coli. J Biol Chem. 1982 Apr 10;257(7):3896–3904. [PubMed] [Google Scholar]
  39. Gay N. J., Walker J. E. The atp operon: nucleotide sequence of the promoter and the genes for the membrane proteins, and the delta subunit of Escherichia coli ATP-synthase. Nucleic Acids Res. 1981 Aug 25;9(16):3919–3926. doi: 10.1093/nar/9.16.3919. [DOI] [PMC free article] [PubMed] [Google Scholar]
  40. Gilbert S. F., de Boer H. A., Nomura M. Identification of initiation sites for the in vitro transcription of rRNA operons rrnE and rrnA in E. coli. Cell. 1979 May;17(1):211–224. doi: 10.1016/0092-8674(79)90309-x. [DOI] [PubMed] [Google Scholar]
  41. Godson G. N., Barrell B. G., Staden R., Fiddes J. C. Nucleotide sequence of bacteriophage G4 DNA. Nature. 1978 Nov 16;276(5685):236–247. doi: 10.1038/276236a0. [DOI] [PubMed] [Google Scholar]
  42. Greenfield L., Boone T., Wilcox G. DNA sequence of the araBAD promoter in Escherichia coli B/r. Proc Natl Acad Sci U S A. 1978 Oct;75(10):4724–4728. doi: 10.1073/pnas.75.10.4724. [DOI] [PMC free article] [PubMed] [Google Scholar]
  43. Grohmann K/Smith L. H., Sinsheimer R. L. New method for isolation and sequence determination of 5'-terminal regions of bacteriophage phiX174 in vitro mRNAs. Biochemistry. 1975 May 6;14(9):1951–1955. doi: 10.1021/bi00680a023. [DOI] [PubMed] [Google Scholar]
  44. Gunsalus R. P., Yanofsky C. Nucleotide sequence and expression of Escherichia coli trpR, the structural gene for the trp aporepressor. Proc Natl Acad Sci U S A. 1980 Dec;77(12):7117–7121. doi: 10.1073/pnas.77.12.7117. [DOI] [PMC free article] [PubMed] [Google Scholar]
  45. Hall C. V., Yanofsky C. Cloning and characterization of the gene for Escherichia coli tryptophanyl-transfer ribonucleic acid synthetase. J Bacteriol. 1981 Dec;148(3):941–949. doi: 10.1128/jb.148.3.941-949.1981. [DOI] [PMC free article] [PubMed] [Google Scholar]
  46. Halling S. M., Simons R. W., Way J. C., Walsh R. B., Kleckner N. DNA sequence organization of IS10-right of Tn10 and comparison with IS10-left. Proc Natl Acad Sci U S A. 1982 Apr;79(8):2608–2612. doi: 10.1073/pnas.79.8.2608. [DOI] [PMC free article] [PubMed] [Google Scholar]
  47. Hansen E. B., Hansen F. G., von Meyenburg K. The nucleotide sequence of the dnaA gene and the first part of the dnaN gene of Escherichia coli K-12. Nucleic Acids Res. 1982 Nov 25;10(22):7373–7385. doi: 10.1093/nar/10.22.7373. [DOI] [PMC free article] [PubMed] [Google Scholar]
  48. Heffron F., McCarthy B. J., Ohtsubo H., Ohtsubo E. DNA sequence analysis of the transposon Tn3: three genes and three sites involved in transposition of Tn3. Cell. 1979 Dec;18(4):1153–1163. doi: 10.1016/0092-8674(79)90228-9. [DOI] [PubMed] [Google Scholar]
  49. Herrmann R. Nucleotide sequence of the bacteriophage T4 gene 57 and a deduced amino acid sequence. Nucleic Acids Res. 1982 Feb 11;10(3):1105–1112. doi: 10.1093/nar/10.3.1105. [DOI] [PMC free article] [PubMed] [Google Scholar]
  50. Higgins C. F., Ames G. F. Regulatory regions of two transport operons under nitrogen control: nucleotide sequences. Proc Natl Acad Sci U S A. 1982 Feb;79(4):1083–1087. doi: 10.1073/pnas.79.4.1083. [DOI] [PMC free article] [PubMed] [Google Scholar]
  51. Hinton D. M., Musso R. E. Transcription initiation sites within an IS2 insertion in a Gal-constitutive mutant of Escherichia coli. Nucleic Acids Res. 1982 Aug 25;10(16):5015–5031. doi: 10.1093/nar/10.16.5015. [DOI] [PMC free article] [PubMed] [Google Scholar]
  52. Hoess R. H., Foeller C., Bidwell K., Landy A. Site-specific recombination functions of bacteriophage lambda: DNA sequence of regulatory regions and overlapping structural genes for Int and Xis. Proc Natl Acad Sci U S A. 1980 May;77(5):2482–2486. doi: 10.1073/pnas.77.5.2482. [DOI] [PMC free article] [PubMed] [Google Scholar]
  53. Horii T., Ogawa T., Ogawa H. Nucleotide sequence of the lexA gene of E. coli. Cell. 1981 Mar;23(3):689–697. doi: 10.1016/0092-8674(81)90432-3. [DOI] [PubMed] [Google Scholar]
  54. Horii T., Ogawa T., Ogawa H. Organization of the recA gene of Escherichia coli. Proc Natl Acad Sci U S A. 1980 Jan;77(1):313–317. doi: 10.1073/pnas.77.1.313. [DOI] [PMC free article] [PubMed] [Google Scholar]
  55. Horowitz H., Christie G. E., Platt T. Nucleotide sequence of the trpD gene, encoding anthranilate synthetase component II of Escherichia coli. J Mol Biol. 1982 Apr 5;156(2):245–256. doi: 10.1016/0022-2836(82)90326-6. [DOI] [PubMed] [Google Scholar]
  56. Horowitz H., Platt T. Identification of trp-p2, an internal promoter in the tryptophan operon of Escherichia coli. J Mol Biol. 1982 Apr 5;156(2):257–267. doi: 10.1016/0022-2836(82)90327-8. [DOI] [PubMed] [Google Scholar]
  57. Horwitz A. H., Morandi C., Wilcox G. Deoxyribonucleic acid sequence of araBAD promoter mutants of Escherichia coli. J Bacteriol. 1980 May;142(2):659–667. doi: 10.1128/jb.142.2.659-667.1980. [DOI] [PMC free article] [PubMed] [Google Scholar]
  58. Hulsebos T., Schoenmakers J. G. Nucleotide sequence of gene VII and of a hypothetical gene (IX) in bacteriophage M13. Nucleic Acids Res. 1978 Dec;5(12):4677–4698. doi: 10.1093/nar/5.12.4677. [DOI] [PMC free article] [PubMed] [Google Scholar]
  59. Ikemura T., Itoh S., Post L. E., Nomura M. Isolation and characterization of stable hybrid mRNA molecules transcribed from ribosomal protein promoters in E. coli. Cell. 1979 Nov;18(3):895–903. doi: 10.1016/0092-8674(79)90141-7. [DOI] [PubMed] [Google Scholar]
  60. Itoh T., Tomizawa J. Formation of an RNA primer for initiation of replication of ColE1 DNA by ribonuclease H. Proc Natl Acad Sci U S A. 1980 May;77(5):2450–2454. doi: 10.1073/pnas.77.5.2450. [DOI] [PMC free article] [PubMed] [Google Scholar]
  61. Jaurin B., Grundström T., Edlund T., Normark S. The E. coli beta-lactamase attenuator mediates growth rate-dependent regulation. Nature. 1981 Mar 19;290(5803):221–225. doi: 10.1038/290221a0. [DOI] [PubMed] [Google Scholar]
  62. Johnson A. D., Poteete A. R., Lauer G., Sauer R. T., Ackers G. K., Ptashne M. lambda Repressor and cro--components of an efficient molecular switch. Nature. 1981 Nov 19;294(5838):217–223. doi: 10.1038/294217a0. [DOI] [PubMed] [Google Scholar]
  63. Johnson R. C., Reznikoff W. S. Localization of the Tn5 transposase promoter using the cycling reaction of RNA polymerase. Nucleic Acids Res. 1981 Apr 24;9(8):1873–1883. doi: 10.1093/nar/9.8.1873. [DOI] [PMC free article] [PubMed] [Google Scholar]
  64. Joyce C. M., Grindley N. D. Identification of two genes immediately downstream from the polA gene of Escherichia coli. J Bacteriol. 1982 Dec;152(3):1211–1219. doi: 10.1128/jb.152.3.1211-1219.1982. [DOI] [PMC free article] [PubMed] [Google Scholar]
  65. Kleid D., Humayun Z., Jeffrey A., Ptashne M. Novel properties of a restriction endonuclease isolated from Haemophilus parahaemolyticus. Proc Natl Acad Sci U S A. 1976 Feb;73(2):293–297. doi: 10.1073/pnas.73.2.293. [DOI] [PMC free article] [PubMed] [Google Scholar]
  66. Kosiba B. E., Schleif R. Arabinose-inducible promoter from Escherichia coli. Its cloning from chromosomal DNA, identification as the araFG promoter and sequence. J Mol Biol. 1982 Mar 25;156(1):53–66. doi: 10.1016/0022-2836(82)90458-2. [DOI] [PubMed] [Google Scholar]
  67. Lawther R. P., Hatfield G. W. Multivalent translational control of transcription termination at attenuator of ilvGEDA operon of Escherichia coli K-12. Proc Natl Acad Sci U S A. 1980 Apr;77(4):1862–1866. doi: 10.1073/pnas.77.4.1862. [DOI] [PMC free article] [PubMed] [Google Scholar]
  68. Le Grice S. F., Matzura H. Binding of RNA polymerase and the catabolite gene activator protein within the cat promoter in Escherichia coli. J Mol Biol. 1981 Aug 5;150(2):185–196. doi: 10.1016/0022-2836(81)90448-4. [DOI] [PubMed] [Google Scholar]
  69. LeClerc J. E., Istock N. L. Specificity of UV mutagenesis in the lac promoter of M13lac hybrid phage DNA. Nature. 1982 Jun 17;297(5867):596–598. doi: 10.1038/297596a0. [DOI] [PubMed] [Google Scholar]
  70. Lebowitz P., Weissman S. M., Radding C. M. Nucleotide sequence of a ribonucleic acid transcribed in vitro from lambda phage deoxyribonucleic acid. J Biol Chem. 1971 Aug 25;246(16):5120–5139. [PubMed] [Google Scholar]
  71. Lee J. S., An G., Friesen J. D., Isono K. Cloning and the nucleotide sequence of the genes for Escherichia coli ribosomal proteins L28 (rpmB) and L33 (rpmG). Mol Gen Genet. 1981;184(2):218–223. doi: 10.1007/BF00272908. [DOI] [PubMed] [Google Scholar]
  72. Lee N., Carbon J. Nucleotide sequence of the 5' end of araBAD operon messenger RNA in Escherichia coli B/r. Proc Natl Acad Sci U S A. 1977 Jan;74(1):49–53. doi: 10.1073/pnas.74.1.49. [DOI] [PMC free article] [PubMed] [Google Scholar]
  73. Lother H., Messer W. Promoters in the E. coli replication origin. Nature. 1981 Nov 26;294(5839):376–378. doi: 10.1038/294376a0. [DOI] [PubMed] [Google Scholar]
  74. Mackie G. A. Nucleotide sequence of the gene for ribosomal protein S20 and its flanking regions. J Biol Chem. 1981 Aug 10;256(15):8177–8182. [PubMed] [Google Scholar]
  75. Majors J. Initiation of in vitro mRNA synthesis from the wild-type lac promoter. Proc Natl Acad Sci U S A. 1975 Nov;72(11):4394–4398. doi: 10.1073/pnas.72.11.4394. [DOI] [PMC free article] [PubMed] [Google Scholar]
  76. Mandecki W., Reznikoff W. S. A lac promoter with a changed distance between -10 and -35 regions. Nucleic Acids Res. 1982 Feb 11;10(3):903–912. doi: 10.1093/nar/10.3.903. [DOI] [PMC free article] [PubMed] [Google Scholar]
  77. Maniatis T., Jeffrey A., Kleid D. G. Nucleotide sequence of the rightward operator of phage lambda. Proc Natl Acad Sci U S A. 1975 Mar;72(3):1184–1188. doi: 10.1073/pnas.72.3.1184. [DOI] [PMC free article] [PubMed] [Google Scholar]
  78. Maniatis T., Ptashne M., Barrell B. G., Donelson J. Sequence of a repressor-binding site in the DNA of bacteriophage lamda. Nature. 1974 Aug 2;250(465):394–397. doi: 10.1038/250394a0. [DOI] [PubMed] [Google Scholar]
  79. Maquat L. E., Reznikoff W. S. lac Promoter mutation Pr115 generates a new transcription initiation point. J Mol Biol. 1980 May 25;139(3):551–556. doi: 10.1016/0022-2836(80)90146-1. [DOI] [PubMed] [Google Scholar]
  80. Maquat L. E., Thornton K., Reznikoff W. S. lac Promoter mutations located downstream from the transcription start site. J Mol Biol. 1980 May 25;139(3):537–549. doi: 10.1016/0022-2836(80)90145-x. [DOI] [PubMed] [Google Scholar]
  81. Marcoli R., Iida S., Bickle T. A. The DNA sequence of an IS/-flanked transposon coding for resistance to chloramphenicol and fusidic acid. FEBS Lett. 1980 Jan 28;110(1):11–14. doi: 10.1016/0014-5793(80)80011-1. [DOI] [PubMed] [Google Scholar]
  82. McConnell D. J. The DNA sequence at the T7 C promoter. Nucleic Acids Res. 1979 Feb;6(2):525–544. doi: 10.1093/nar/6.2.525. [DOI] [PMC free article] [PubMed] [Google Scholar]
  83. Meyer B. J., Kleid D. G., Ptashne M. Lambda repressor turns off transcription of its own gene. Proc Natl Acad Sci U S A. 1975 Dec;72(12):4785–4789. doi: 10.1073/pnas.72.12.4785. [DOI] [PMC free article] [PubMed] [Google Scholar]
  84. Meyer B. J., Maurer R., Ptashne M. Gene regulation at the right operator (OR) of bacteriophage lambda. II. OR1, OR2, and OR3: their roles in mediating the effects of repressor and cro. J Mol Biol. 1980 May 15;139(2):163–194. doi: 10.1016/0022-2836(80)90303-4. [DOI] [PubMed] [Google Scholar]
  85. Miki T., Ebina Y., Kishi F., Nakazawa A. Organization of the lexA gene of Escherichia coli and nucleotide sequence of the regulatory region. Nucleic Acids Res. 1981 Feb 11;9(3):529–543. doi: 10.1093/nar/9.3.529. [DOI] [PMC free article] [PubMed] [Google Scholar]
  86. Miozzari G., Yanofsky C. Naturally occurring promoter down mutation: nucleotide sequence of the trp promoter/operator/leader region of Shigella dysenteriae 16. Proc Natl Acad Sci U S A. 1978 Nov;75(11):5580–5584. doi: 10.1073/pnas.75.11.5580. [DOI] [PMC free article] [PubMed] [Google Scholar]
  87. Miyajima A., Shibuya M., Kuchino Y., Kaziro Y. Transcription of the E. coli tufB gene: cotranscription with four tRNA genes and inhibition by guanosine-5'-diphosphate-3'-diphosphate. Mol Gen Genet. 1981;183(1):13–19. doi: 10.1007/BF00270131. [DOI] [PubMed] [Google Scholar]
  88. Moore S. K., Garvin R. T., James E. Nucleotide sequence of the argF regulatory region of Escherichia coli K-12. Gene. 1981 Dec;16(1-3):119–132. doi: 10.1016/0378-1119(81)90068-8. [DOI] [PubMed] [Google Scholar]
  89. Morita M., Oka A. The structure of a transcriptional unit on colicin E1 plasmid. Eur J Biochem. 1979 Jul;97(2):435–443. doi: 10.1111/j.1432-1033.1979.tb13131.x. [DOI] [PubMed] [Google Scholar]
  90. Movva N. R., Nakamura K., Inouye M. Regulatory region of the gene for the ompA protein, a major outer membrane protein of Escherichia coli. Proc Natl Acad Sci U S A. 1980 Jul;77(7):3845–3849. doi: 10.1073/pnas.77.7.3845. [DOI] [PMC free article] [PubMed] [Google Scholar]
  91. Movva R. N., Green P., Nakamura K., Inouye M. Interaction of cAMP receptor protein with the ompA gene, a gene for a major outer membrane protein of Escherichia coli. FEBS Lett. 1981 Jun 15;128(2):186–190. doi: 10.1016/0014-5793(81)80077-4. [DOI] [PubMed] [Google Scholar]
  92. Mozola M. A., Friedman D. I., Crawford C. L., Wulff D. L., Shimatake H., Rosenberg M. Mutations reducing the activity of c17, a promoter of phage lambda formed by a tandem duplication. Proc Natl Acad Sci U S A. 1979 Mar;76(3):1122–1125. doi: 10.1073/pnas.76.3.1122. [DOI] [PMC free article] [PubMed] [Google Scholar]
  93. Musso R. E., Di Lauro R., Adhya S., de Crombrugghe B. Dual control for transcription of the galactose operon by cyclic AMP and its receptor protein at two interspersed promoters. Cell. 1977 Nov;12(3):847–854. doi: 10.1016/0092-8674(77)90283-5. [DOI] [PubMed] [Google Scholar]
  94. Musso R., Di Lauro R., Rosenberg M., de Crombrugghe B. Nucleotide sequence of the operator-promoter region of the galactose operon of Escherichia coli. Proc Natl Acad Sci U S A. 1977 Jan;74(1):106–110. doi: 10.1073/pnas.74.1.106. [DOI] [PMC free article] [PubMed] [Google Scholar]
  95. Nakajima N., Ozeki H., Shimura Y. In vitro transcription of the supB-E tRNA operon of Escherichia coli. Characterization of transcription products. J Biol Chem. 1982 Sep 25;257(18):11113–11120. [PubMed] [Google Scholar]
  96. Nakajima N., Ozeki H., Shimura Y. Organization and structure of an E. coli tRNA operon containing seven tRNA genes. Cell. 1981 Jan;23(1):239–249. doi: 10.1016/0092-8674(81)90288-9. [DOI] [PubMed] [Google Scholar]
  97. Nakamura K., Inouye M. DNA sequence of the gene for the outer membrane lipoprotein of E. coli: an extremely AT-rich promoter. Cell. 1979 Dec;18(4):1109–1117. doi: 10.1016/0092-8674(79)90224-1. [DOI] [PubMed] [Google Scholar]
  98. Nakamura M., Yamada M., Hirota Y., Sugimoto K., Oka A., Takanami M. Nucleotide sequence of the asnA gene coding for asparagine synthetase of E. coli K-12. Nucleic Acids Res. 1981 Sep 25;9(18):4669–4676. doi: 10.1093/nar/9.18.4669. [DOI] [PMC free article] [PubMed] [Google Scholar]
  99. Nargang F. E., Subrahmanyam C. S., Umbarger H. E. Nucleotide sequence of ilvGEDA operon attenuator region of Escherichia coli. Proc Natl Acad Sci U S A. 1980 Apr;77(4):1823–1827. doi: 10.1073/pnas.77.4.1823. [DOI] [PMC free article] [PubMed] [Google Scholar]
  100. Ogata R. T., Winters C., Levine R. P. Nucleotide sequence analysis of the complement resistance gene from plasmid R100. J Bacteriol. 1982 Aug;151(2):819–827. doi: 10.1128/jb.151.2.819-827.1982. [DOI] [PMC free article] [PubMed] [Google Scholar]
  101. Olins P. O., Nomura M. Regulation of the S10 ribosomal protein operon in E. coli: nucleotide sequence at the start of the operon. Cell. 1981 Oct;26(2 Pt 2):205–211. doi: 10.1016/0092-8674(81)90303-2. [DOI] [PubMed] [Google Scholar]
  102. Oppenheim D. S., Bennett G. N., Yanofsky C. Escherichia coli RNA polymerase and trp repressor interaction with the promoter-operator region of the tryptophan operon of Salmonella typhimurium. J Mol Biol. 1980 Dec 5;144(2):133–142. doi: 10.1016/0022-2836(80)90029-7. [DOI] [PubMed] [Google Scholar]
  103. Oppenheim D. S., Yanofsky C. Functional analysis of wild=type and altered tryptophan operon promoters of Salmonella typhimurium in Escherichia coli. J Mol Biol. 1980 Dec 5;144(2):143–161. doi: 10.1016/0022-2836(80)90030-3. [DOI] [PubMed] [Google Scholar]
  104. Otsuka A., Abelson J. The regulatory region of the biotin operon in Escherichia coli. Nature. 1978 Dec 14;276(5689):689–694. doi: 10.1038/276689a0. [DOI] [PubMed] [Google Scholar]
  105. Pannekoek H., Maat J., van den Berg E., Noordermeer I. Structure of a promotor on plasmid pMB9 derived from plasmid pSC101. Nucleic Acids Res. 1980 Apr 11;8(7):1535–1550. doi: 10.1093/nar/8.7.1535. [DOI] [PMC free article] [PubMed] [Google Scholar]
  106. Piette J., Cunin R., Boyen A., Charlier D., Crabeel M., Van Vliet F., Glansdorff N., Squires C., Squires C. L. The regulatory region of the divergent argECBH operon in Escherichia coli K-12. Nucleic Acids Res. 1982 Dec 20;10(24):8031–8048. doi: 10.1093/nar/10.24.8031. [DOI] [PMC free article] [PubMed] [Google Scholar]
  107. Piette J., Cunin R., Van Vliet F., Charlier D., Crabeel M., Ota Y., Glansdorff N. Homologous control sites and DNA transcription starts in the related argF and argI genes of Escherichia coli K12. EMBO J. 1982;1(7):853–857. doi: 10.1002/j.1460-2075.1982.tb01259.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  108. Pirrotta V. Operators and promoters in the OR region of phage 434. Nucleic Acids Res. 1979 Apr;6(4):1495–1508. doi: 10.1093/nar/6.4.1495. [DOI] [PMC free article] [PubMed] [Google Scholar]
  109. Pirtle R. M., Pirtle I. L., Inouye M. Homologous nucleotide sequences between prokaryotic and eukaryotic mRNAs: the 5'-end sequence of the mRNA of the lipoprotein of the Escherichia coli outer membrane. Proc Natl Acad Sci U S A. 1978 May;75(5):2190–2194. doi: 10.1073/pnas.75.5.2190. [DOI] [PMC free article] [PubMed] [Google Scholar]
  110. Post L. E., Arfsten A. E., Davis G. R., Nomura M. DNA sequence of the promoter region for the alpha ribosomal protein operon in Escherichia coli. J Biol Chem. 1980 May 25;255(10):4653–4659. [PubMed] [Google Scholar]
  111. Post L. E., Arfsten A. E., Nomura M., Jaskunas S. R. Isolation and characterization of a promoter mutant in the str ribosomal protein operon in E. coli. Cell. 1978 Sep;15(1):231–236. doi: 10.1016/0092-8674(78)90097-1. [DOI] [PubMed] [Google Scholar]
  112. Post L. E., Arfsten A. E., Reusser F., Nomura M. DNA sequences of promoter regions for the str and spc ribosomal protein operons in E. coli. Cell. 1978 Sep;15(1):215–229. doi: 10.1016/0092-8674(78)90096-x. [DOI] [PubMed] [Google Scholar]
  113. Post L. E., Strycharz G. D., Nomura M., Lewis H., Dennis P. P. Nucleotide sequence of the ribosomal protein gene cluster adjacent to the gene for RNA polymerase subunit beta in Escherichia coli. Proc Natl Acad Sci U S A. 1979 Apr;76(4):1697–1701. doi: 10.1073/pnas.76.4.1697. [DOI] [PMC free article] [PubMed] [Google Scholar]
  114. Poteete A. R., Ptashne M., Ballivet M., Eisen H. Operator sequences of bacteriophages P22 and 21. J Mol Biol. 1980 Feb 15;137(1):81–91. doi: 10.1016/0022-2836(80)90158-8. [DOI] [PubMed] [Google Scholar]
  115. Poteete A. R., Ptashne M. Control of transcription by the bacteriophage P22 repressor. J Mol Biol. 1982 May 5;157(1):21–48. doi: 10.1016/0022-2836(82)90511-3. [DOI] [PubMed] [Google Scholar]
  116. Pribnow D. Bacteriophage T7 early promoters: nucleotide sequences of two RNA polymerase binding sites. J Mol Biol. 1975 Dec 15;99(3):419–443. doi: 10.1016/s0022-2836(75)80136-7. [DOI] [PubMed] [Google Scholar]
  117. Priess H., Kamp D., Kahmann R., Bräuer B., Delius H. Nucleotide sequence of the immunity region of bacteriophage Mu. Mol Gen Genet. 1982;186(3):315–321. doi: 10.1007/BF00729448. [DOI] [PubMed] [Google Scholar]
  118. Ptashne M., Backman K., Humayun M. Z., Jeffrey A., Maurer R., Meyer B., Sauer R. T. Autoregulation and function of a repressor in bacteriophage lambda. Science. 1976 Oct 8;194(4261):156–161. doi: 10.1126/science.959843. [DOI] [PubMed] [Google Scholar]
  119. Putney S. D., Meléndez D. L., Schimmel P. R. Cloning, partial sequencing, and in vitro transcription of the gene for alanine tRNA synthetase. J Biol Chem. 1981 Jan 10;256(1):205–211. [PubMed] [Google Scholar]
  120. Queen C., Rosenberg M. A promoter of pBR322 activated by cAMP receptor protein. Nucleic Acids Res. 1981 Jul 24;9(14):3365–3377. doi: 10.1093/nar/9.14.3365. [DOI] [PMC free article] [PubMed] [Google Scholar]
  121. Reed R. E., Baer M. F., Guerrier-Takada C., Donis-Keller H., Altman S. Nucleotide sequence of the gene encoding the RNA subunit (M1 RNA) of ribonuclease P from Escherichia coli. Cell. 1982 Sep;30(2):627–636. doi: 10.1016/0092-8674(82)90259-8. [DOI] [PubMed] [Google Scholar]
  122. Reed R. R., Shibuya G. I., Steitz J. A. Nucleotide sequence of gamma delta resolvase gene and demonstration that its gene product acts as a repressor of transcription. Nature. 1982 Nov 25;300(5890):381–383. doi: 10.1038/300381a0. [DOI] [PubMed] [Google Scholar]
  123. Rivera M. J., Smits M. A., Quint W., Schoenmakers J. G., Konings R. N. Expression of bacteriophage M13 DNA in vivo. Localization of the transcription initiation and termination signal of the mRNA coding for the major capsid protein. Nucleic Acids Res. 1978 Aug;5(8):2895–2912. doi: 10.1093/nar/5.8.2895. [DOI] [PMC free article] [PubMed] [Google Scholar]
  124. Roof W. D., Foltermann K. F., Wild J. R. The organization and regulation of the pyrBI operon in E. coli includes a rho-independent attenuator sequence. Mol Gen Genet. 1982;187(3):391–400. doi: 10.1007/BF00332617. [DOI] [PubMed] [Google Scholar]
  125. Rosen E. D., Hartley J. L., Matz K., Nichols B. P., Young K. M., Donelson J. E., Gussin G. N. DNA sequence analysis of prm-mutations of coliphage lambda. Gene. 1980 Nov;11(3-4):197–205. doi: 10.1016/0378-1119(80)90060-8. [DOI] [PubMed] [Google Scholar]
  126. Rosen J., Ryder T., Ohtsubo H., Ohtsubo E. Role of RNA transcripts in replication incompatibility and copy number control in antibiotic resistance plasmid derivatives. Nature. 1981 Apr 30;290(5809):794–797. doi: 10.1038/290794a0. [DOI] [PubMed] [Google Scholar]
  127. Rosenberg M., Court D. Regulatory sequences involved in the promotion and termination of RNA transcription. Annu Rev Genet. 1979;13:319–353. doi: 10.1146/annurev.ge.13.120179.001535. [DOI] [PubMed] [Google Scholar]
  128. Rosenberg M., Court D., Shimatake H., Brady C., Wulff D. L. The relationship between function and DNA sequence in an intercistronic regulatory region in phage lambda. Nature. 1978 Mar 30;272(5652):414–423. doi: 10.1038/272414a0. [DOI] [PubMed] [Google Scholar]
  129. Rothstein S. J., Reznikoff W. S. The functional differences in the inverted repeats of Tn5 are caused by a single base pair nonhomology. Cell. 1981 Jan;23(1):191–199. doi: 10.1016/0092-8674(81)90284-1. [DOI] [PubMed] [Google Scholar]
  130. Rothstein S. J., Reznikoff W. S. The functional differences in the inverted repeats of Tn5 are caused by a single base pair nonhomology. Cell. 1981 Jan;23(1):191–199. doi: 10.1016/0092-8674(81)90284-1. [DOI] [PubMed] [Google Scholar]
  131. Russell D. R., Bennett G. N. Characterization of the beta-lactamase promoter of pBR322. Nucleic Acids Res. 1981 Jun 11;9(11):2517–2533. doi: 10.1093/nar/9.11.2517. [DOI] [PMC free article] [PubMed] [Google Scholar]
  132. Sahagan B. G., Dahlberg J. E. A small, unstable RNA molecule of Escherichia coli: spot 42 RNA. I. Nucleotide sequence analysis. J Mol Biol. 1979 Jul 5;131(3):573–592. doi: 10.1016/0022-2836(79)90008-1. [DOI] [PubMed] [Google Scholar]
  133. Sancar A., Stachelek C., Konigsberg W., Rupp W. D. Sequences of the recA gene and protein. Proc Natl Acad Sci U S A. 1980 May;77(5):2611–2615. doi: 10.1073/pnas.77.5.2611. [DOI] [PMC free article] [PubMed] [Google Scholar]
  134. Sancar G. B., Sancar A., Little J. W., Rupp W. D. The uvrB gene of Escherichia coli has both lexA-repressed and lexA-independent promoters. Cell. 1982 Mar;28(3):523–530. doi: 10.1016/0092-8674(82)90207-0. [DOI] [PubMed] [Google Scholar]
  135. Sanger F., Air G. M., Barrell B. G., Brown N. L., Coulson A. R., Fiddes C. A., Hutchison C. A., Slocombe P. M., Smith M. Nucleotide sequence of bacteriophage phi X174 DNA. Nature. 1977 Feb 24;265(5596):687–695. doi: 10.1038/265687a0. [DOI] [PubMed] [Google Scholar]
  136. Schaller H., Gray C., Herrmann K. Nucleotide sequence of an RNA polymerase binding site from the DNA of bacteriophage fd. Proc Natl Acad Sci U S A. 1975 Feb;72(2):737–741. doi: 10.1073/pnas.72.2.737. [DOI] [PMC free article] [PubMed] [Google Scholar]
  137. Scherer G., Hobom G., Kössel H. DNA base sequence of the po promoter region of phage lamdba. Nature. 1977 Jan 13;265(5590):117–121. doi: 10.1038/265117a0. [DOI] [PubMed] [Google Scholar]
  138. Schmeissner U., Court D., McKenney K., Rosenberg M. Positively activated transcription of lambda integrase gene initiates with UTP in vivo. Nature. 1981 Jul 9;292(5819):173–175. doi: 10.1038/292173a0. [DOI] [PubMed] [Google Scholar]
  139. Schmeissner U., Court D., Shimatake H., Rosenberg M. Promoter for the establishment of repressor synthesis in bacteriophage lambda. Proc Natl Acad Sci U S A. 1980 Jun;77(6):3191–3195. doi: 10.1073/pnas.77.6.3191. [DOI] [PMC free article] [PubMed] [Google Scholar]
  140. Schnier J., Isono K. The DNA sequence of the gene rpsA of Escherichia coli coding for ribosomal protein S1. Nucleic Acids Res. 1982 Mar 25;10(6):1857–1865. doi: 10.1093/nar/10.6.1857. [DOI] [PMC free article] [PubMed] [Google Scholar]
  141. Seeburg P. H., Nüsslein C., Schaller H. Interaction of RNA polymerase with promoters from bacteriophage fd. Eur J Biochem. 1977 Mar 15;74(1):107–113. doi: 10.1111/j.1432-1033.1977.tb11372.x. [DOI] [PubMed] [Google Scholar]
  142. Siebenlist U. Nucleotide sequence of the three major early promoters of bacteriophage T7. Nucleic Acids Res. 1979;6(5):1895–1907. doi: 10.1093/nar/6.5.1895. [DOI] [PMC free article] [PubMed] [Google Scholar]
  143. Siebenlist U., Simpson R. B., Gilbert W. E. coli RNA polymerase interacts homologously with two different promoters. Cell. 1980 Jun;20(2):269–281. doi: 10.1016/0092-8674(80)90613-3. [DOI] [PubMed] [Google Scholar]
  144. Singleton C. K., Roeder W. D., Bogosian G., Somerville R. L., Weith H. L. DNA sequence of the E. coli trpR gene and prediction of the amino acid sequence of Trp repressor. Nucleic Acids Res. 1980 Apr 11;8(7):1551–1560. doi: 10.1093/nar/8.7.1551. [DOI] [PMC free article] [PubMed] [Google Scholar]
  145. Smith B. R., Schleif R. Nucleotide sequence of the L-arabinose regulatory region of Escherichia coli K12. J Biol Chem. 1978 Oct 10;253(19):6931–6933. [PubMed] [Google Scholar]
  146. Smith D. R., Calvo J. M. Nucleotide sequence of the E coli gene coding for dihydrofolate reductase. Nucleic Acids Res. 1980 May 24;8(10):2255–2274. doi: 10.1093/nar/8.10.2255. [DOI] [PMC free article] [PubMed] [Google Scholar]
  147. Smith D. R., Rood J. I., Bird P. I., Sneddon M. K., Calvo J. M., Morrison J. F. Amplification and modification of dihydrofolate reductase in Escherichia coli. Nucleotide sequence of fol genes from mutationally altered plasmids. J Biol Chem. 1982 Aug 10;257(15):9043–9048. [PubMed] [Google Scholar]
  148. Smith L. H., Grohmann K., Sinsheimer R. L. Nucleotide sequences of the 5' termini of phi X174 mRNAs synthesized in vitro. Nucleic Acids Res. 1974 Nov;1(11):1521–1529. doi: 10.1093/nar/1.11.1521. [DOI] [PMC free article] [PubMed] [Google Scholar]
  149. Som T., Tomizawa J. Origin of replication of Escherichia coli plasmid RSF 1030. Mol Gen Genet. 1982;187(3):375–383. doi: 10.1007/BF00332615. [DOI] [PubMed] [Google Scholar]
  150. Spicer E. K., Noble J. A., Nossal N. G., Konigsberg W. H., Williams K. R. Bacteriophage T4 gene 45. Sequences of the structural gene and its protein product. J Biol Chem. 1982 Aug 10;257(15):8972–8979. [PubMed] [Google Scholar]
  151. Squires C., Lee F., Bertrand K., Squires C. L., Bronson M. J., Yanofsky C. Nucleotide sequence of the 5' end of tryptophan messenger RNA of Escherichia coli. J Mol Biol. 1976 May 15;103(2):351–381. doi: 10.1016/0022-2836(76)90317-x. [DOI] [PubMed] [Google Scholar]
  152. Steege D. A. 5'-Terminal nucleotide sequence of Escherichia coli lactose repressor mRNA: features of translational initiation and reinitiation sites. Proc Natl Acad Sci U S A. 1977 Oct;74(10):4163–4167. doi: 10.1073/pnas.74.10.4163. [DOI] [PMC free article] [PubMed] [Google Scholar]
  153. Stefano J. E., Gralla J. D. Spacer mutations in the lac ps promoter. Proc Natl Acad Sci U S A. 1982 Feb;79(4):1069–1072. doi: 10.1073/pnas.79.4.1069. [DOI] [PMC free article] [PubMed] [Google Scholar]
  154. Stougaard P., Molin S., Nordström K. RNAs involved in copy-number control and incompatibility of plasmid R1. Proc Natl Acad Sci U S A. 1981 Oct;78(10):6008–6012. doi: 10.1073/pnas.78.10.6008. [DOI] [PMC free article] [PubMed] [Google Scholar]
  155. Stuitje A. R., Spelt C. E., Veltkamp E., Nijkamp H. J. Identification of mutations affecting replication control of plasmid Clo DF13. Nature. 1981 Mar 19;290(5803):264–267. doi: 10.1038/290264a0. [DOI] [PubMed] [Google Scholar]
  156. Sugimoto K., Okamoto T., Sugisaki H., Takanami M. The nucleotide sequence of an RNA polymerase binding site on bacteriophage fd DNA. Nature. 1975 Feb 6;253(5491):410–414. doi: 10.1038/253410a0. [DOI] [PubMed] [Google Scholar]
  157. Sugimoto K., Sugisaki H., Okamoto T., Takanami M. Studies on bacteriophage fd DNA. III. Nucleotide sequence preceding the RNA start-site on a promoter-containing fragment. Nucleic Acids Res. 1975 Nov;2(11):2091–2100. doi: 10.1093/nar/2.11.2091. [DOI] [PMC free article] [PubMed] [Google Scholar]
  158. Sugimoto K., Sugisaki H., Okamoto T., Takanami M. Studies on bacteriophage fd DNA. IV. The sequence of messenger RNA for the major coat protein gene. J Mol Biol. 1977 Apr 25;111(4):487–507. doi: 10.1016/s0022-2836(77)80065-x. [DOI] [PubMed] [Google Scholar]
  159. Sutcliffe J. G. Complete nucleotide sequence of the Escherichia coli plasmid pBR322. Cold Spring Harb Symp Quant Biol. 1979;43(Pt 1):77–90. doi: 10.1101/sqb.1979.043.01.013. [DOI] [PubMed] [Google Scholar]
  160. Sutcliffe J. G. Nucleotide sequence of the ampicillin resistance gene of Escherichia coli plasmid pBR322. Proc Natl Acad Sci U S A. 1978 Aug;75(8):3737–3741. doi: 10.1073/pnas.75.8.3737. [DOI] [PMC free article] [PubMed] [Google Scholar]
  161. Takanami M., Sugimoto K., Sugisaki H., Okamoto T. Sequence of promoter for coat protein gene of bacteriophage fd. Nature. 1976 Mar 25;260(5549):297–302. doi: 10.1038/260297a0. [DOI] [PubMed] [Google Scholar]
  162. Tso J. Y., Zalkin H., van Cleemput M., Yanofsky C., Smith J. M. Nucleotide sequence of Escherichia coli purF and deduced amino acid sequence of glutamine phosphoribosylpyrophosphate amidotransferase. J Biol Chem. 1982 Apr 10;257(7):3525–3531. [PubMed] [Google Scholar]
  163. Valentin-Hansen P., Aiba H., Schümperli D. The structure of tandem regulatory regions in the deo operon of Escherichia coli K12. EMBO J. 1982;1(3):317–322. doi: 10.1002/j.1460-2075.1982.tb01167.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  164. Verde P., Frunzio R., di Nocera P. P., Blasi F., Bruni C. B. Identification, nucleotide sequence and expression of the regulatory region of the histidine operon of Escherichia coli K-12. Nucleic Acids Res. 1981 May 11;9(9):2075–2086. doi: 10.1093/nar/9.9.2075. [DOI] [PMC free article] [PubMed] [Google Scholar]
  165. Wallace R. G., Lee N., Fowler A. V. The araC gene of Escherichia coli: transcriptional and translational start-points and complete nucleotide sequence. Gene. 1980 Dec;12(3-4):179–190. doi: 10.1016/0378-1119(80)90100-6. [DOI] [PubMed] [Google Scholar]
  166. Walz A., Pirrotta V., Ineichen K. Lambda repressor regulates the switch between PR and Prm promoters. Nature. 1976 Aug 19;262(5570):665–669. doi: 10.1038/262665a0. [DOI] [PubMed] [Google Scholar]
  167. Walz A., Pirrotta V. Sequence of the PR promoter of phage lambda. Nature. 1975 Mar 13;254(5496):118–121. doi: 10.1038/254118a0. [DOI] [PubMed] [Google Scholar]
  168. Wessler S. R., Calvo J. M. Control of leu operon expression in Escherichia coli by a transcription attenuation mechanism. J Mol Biol. 1981 Jul 15;149(4):579–597. doi: 10.1016/0022-2836(81)90348-x. [DOI] [PubMed] [Google Scholar]
  169. Wulff D. L., Beher M., Izumi S., Beck J., Mahoney M., Shimatake H., Brady C., Court D., Rosenberg M. Structure and function of the cy control region of bacteriophage lambda. J Mol Biol. 1980 Apr;138(2):209–230. doi: 10.1016/0022-2836(80)90284-3. [DOI] [PubMed] [Google Scholar]
  170. Wurtzel E. T., Chou M. Y., Inouye M. Osmoregulation of gene expression. I. DNA sequence of the ompR gene of the ompB operon of Escherichia coli and characterization of its gene product. J Biol Chem. 1982 Nov 25;257(22):13685–13691. [PubMed] [Google Scholar]
  171. Yanofsky C., Platt T., Crawford I. P., Nichols B. P., Christie G. E., Horowitz H., VanCleemput M., Wu A. M. The complete nucleotide sequence of the tryptophan operon of Escherichia coli. Nucleic Acids Res. 1981 Dec 21;9(24):6647–6668. doi: 10.1093/nar/9.24.6647. [DOI] [PMC free article] [PubMed] [Google Scholar]
  172. Youderian P., Bouvier S., Susskind M. M. Sequence determinants of promoter activity. Cell. 1982 Oct;30(3):843–853. doi: 10.1016/0092-8674(82)90289-6. [DOI] [PubMed] [Google Scholar]
  173. Young R. A., Steitz J. A. Tandem promoters direct E. coli ribosomal RNA synthesis. Cell. 1979 May;17(1):225–234. doi: 10.1016/0092-8674(79)90310-6. [DOI] [PubMed] [Google Scholar]
  174. Zurawski G., Gunsalus R. P., Brown K. D., Yanofsky C. Structure and regulation of aroH, the structural gene for the tryptophan-repressible 3-deoxy-D-arabino-heptulosonic acid-7-phosphate synthetase of Escherichia coli. J Mol Biol. 1981 Jan 5;145(1):47–73. doi: 10.1016/0022-2836(81)90334-x. [DOI] [PubMed] [Google Scholar]
  175. de Boer H. A., Gilbert S. F., Nomura M. DNA sequences of promoter regions for rRNA operons rrnE and rrnA in E. coli. Cell. 1979 May;17(1):201–209. doi: 10.1016/0092-8674(79)90308-8. [DOI] [PubMed] [Google Scholar]
  176. van Wezenbeek P. M., Hulsebos T. J., Schoenmakers J. G. Nucleotide sequence of the filamentous bacteriophage M13 DNA genome: comparison with phage fd. Gene. 1980 Oct;11(1-2):129–148. doi: 10.1016/0378-1119(80)90093-1. [DOI] [PubMed] [Google Scholar]
  177. van den Berg E., Zwetsloot J., Noordermeer I., Pannekoek H., Dekker B., Dijkema R., van Ormondt H. The structure and function of the regulatory elements of the Escherichia coli uvrB gene. Nucleic Acids Res. 1981 Nov 11;9(21):5623–5643. doi: 10.1093/nar/9.21.5623. [DOI] [PMC free article] [PubMed] [Google Scholar]
  178. van den Elzen P. J., Maat J., Walters H. H., Veltkamp E., Nijkamp H. J. The nucleotide sequence of the bacteriocin promoters of plasmids Clo DF13 and Co1 E1: role of lexA repressor and cAMP in the regulation of promoter activity. Nucleic Acids Res. 1982 Mar 25;10(6):1913–1928. doi: 10.1093/nar/10.6.1913. [DOI] [PMC free article] [PubMed] [Google Scholar]