The Universal Protein Resource (UniProt) - PubMed (original) (raw)
The Universal Protein Resource (UniProt)
UniProt Consortium. Nucleic Acids Res. 2007 Jan.
Abstract
The ability to store and interconnect all available information on proteins is crucial to modern biological research. Accordingly, the Universal Protein Resource (UniProt) plays an increasingly important role by providing a stable, comprehensive, freely accessible central resource on protein sequences and functional annotation. UniProt is produced by the UniProt Consortium, formed in 2002 by the European Bioinformatics Institute (EBI), the Protein Information Resource (PIR) and the Swiss Institute of Bioinformatics (SIB). The core activities include manual curation of protein sequences assisted by computational analysis, sequence archiving, development of a user-friendly UniProt web site and the provision of additional value-added information through cross-references to other databases. UniProt is comprised of three major components, each optimized for different uses: the UniProt Archive, the UniProt Knowledgebase and the UniProt Reference Clusters. An additional component consisting of metagenomic and environmental sequences has recently been added to UniProt to ensure availability of such sequences in a timely fashion. UniProt is updated and distributed on a bi-weekly basis and can be accessed online for searches or download at http://www.uniprot.org.
Similar articles
- The universal protein resource (UniProt).
UniProt Consortium. UniProt Consortium. Nucleic Acids Res. 2008 Jan;36(Database issue):D190-5. doi: 10.1093/nar/gkm895. Epub 2007 Nov 27. Nucleic Acids Res. 2008. PMID: 18045787 Free PMC article. - The Universal Protein Resource (UniProt) 2009.
UniProt Consortium. UniProt Consortium. Nucleic Acids Res. 2009 Jan;37(Database issue):D169-74. doi: 10.1093/nar/gkn664. Epub 2008 Oct 4. Nucleic Acids Res. 2009. PMID: 18836194 Free PMC article. - Ongoing and future developments at the Universal Protein Resource.
UniProt Consortium. UniProt Consortium. Nucleic Acids Res. 2011 Jan;39(Database issue):D214-9. doi: 10.1093/nar/gkq1020. Epub 2010 Nov 4. Nucleic Acids Res. 2011. PMID: 21051339 Free PMC article. - Update on genome completion and annotations: Protein Information Resource.
Wu C, Nebert DW. Wu C, et al. Hum Genomics. 2004 Mar;1(3):229-33. doi: 10.1186/1479-7364-1-3-229. Hum Genomics. 2004. PMID: 15588483 Free PMC article. Review. - Protein sequence databases.
Apweiler R, Bairoch A, Wu CH. Apweiler R, et al. Curr Opin Chem Biol. 2004 Feb;8(1):76-80. doi: 10.1016/j.cbpa.2003.12.004. Curr Opin Chem Biol. 2004. PMID: 15036160 Review.
Cited by
- A knowledge base for Vitis vinifera functional analysis.
Pulvirenti A, Giugno R, Distefano R, Pigola G, Mongiovi M, Giudice G, Vendramin V, Lombardo A, Cattonaro F, Ferro A. Pulvirenti A, et al. BMC Syst Biol. 2015;9 Suppl 3(Suppl 3):S5. doi: 10.1186/1752-0509-9-S3-S5. Epub 2015 Jun 1. BMC Syst Biol. 2015. PMID: 26050794 Free PMC article. - Rational Design of SARS-CoV-2 Spike Glycoproteins To Increase Immunogenicity By T Cell Epitope Engineering.
Ong E, Huang X, Pearce R, Zhang Y, He Y. Ong E, et al. bioRxiv [Preprint]. 2020 Aug 14:2020.08.14.251496. doi: 10.1101/2020.08.14.251496. bioRxiv. 2020. PMID: 32817949 Free PMC article. Updated. Preprint. - Web services at the European bioinformatics institute.
Labarga A, Valentin F, Anderson M, Lopez R. Labarga A, et al. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W6-11. doi: 10.1093/nar/gkm291. Epub 2007 Jun 18. Nucleic Acids Res. 2007. PMID: 17576686 Free PMC article. - Synonymous codon usage influences the local protein structure observed.
Saunders R, Deane CM. Saunders R, et al. Nucleic Acids Res. 2010 Oct;38(19):6719-28. doi: 10.1093/nar/gkq495. Epub 2010 Jun 8. Nucleic Acids Res. 2010. PMID: 20530529 Free PMC article. - Comparative analysis of web-based programs for single amino acid substitutions in proteins.
Choudhury A, Mohammad T, Anjum F, Shafie A, Singh IK, Abdullaev B, Pasupuleti VR, Adnan M, Yadav DK, Hassan MI. Choudhury A, et al. PLoS One. 2022 May 4;17(5):e0267084. doi: 10.1371/journal.pone.0267084. eCollection 2022. PLoS One. 2022. PMID: 35507592 Free PMC article.
References
- Leinonen R., Diez F.G., Binns D., Fleischmann W., Lopez R., Apweiler R. UniProt archive. Bioinformatics. 2004;20:3236–3237. - PubMed
- Wieser D., Kretschmann E., Apweiler R. Filtering erroneous protein annotation. Bioinformatics. 2004;20:i342–i347. - PubMed
- Gattiker A., Michoud K., Rivoire C., Auchincloss A.H., Coudert E., Lima T., Kersey P., Pagni M., Sigrist C.J., Lachaize C., et al. Automated annotation of microbial proteomes in SWISS-PROT. Comput. Biol. Chem. 2003;27:49–58. - PubMed
- Fleischmann W., Moller S., Gateau A., Apweiler R. A novel method for automatic functional annotation of proteins. Bioinformatics. 1999;15:228–233. - PubMed
Publication types
MeSH terms
Substances
Grants and funding
- HHSN266200400061C/AI/NIAID NIH HHS/United States
- U01 HG002712/HG/NHGRI NIH HHS/United States
- 1 U01 HG02712-01/HG/NHGRI NIH HHS/United States
- 1R01HGO2273-01/PHS HHS/United States