TASSEL: software for association mapping of complex traits in diverse samples - PubMed (original) (raw)
TASSEL: software for association mapping of complex traits in diverse samples
Peter J Bradbury et al. Bioinformatics. 2007.
Abstract
Association analyses that exploit the natural diversity of a genome to map at very high resolutions are becoming increasingly important. In most studies, however, researchers must contend with the confounding effects of both population and family structure. TASSEL (Trait Analysis by aSSociation, Evolution and Linkage) implements general linear model and mixed linear model approaches for controlling population and family structure. For result interpretation, the program allows for linkage disequilibrium statistics to be calculated and visualized graphically. Database browsing and data importation is facilitated by integrated middleware. Other features include analyzing insertions/deletions, calculating diversity statistics, integration of phenotypic and genotypic data, imputing missing data and calculating principal components.
Similar articles
- WHAP: haplotype-based association analysis.
Purcell S, Daly MJ, Sham PC. Purcell S, et al. Bioinformatics. 2007 Jan 15;23(2):255-6. doi: 10.1093/bioinformatics/btl580. Epub 2006 Nov 21. Bioinformatics. 2007. PMID: 17118959 - LdCompare: rapid computation of single- and multiple-marker r2 and genetic coverage.
Hao K, Di X, Cawley S. Hao K, et al. Bioinformatics. 2007 Jan 15;23(2):252-4. doi: 10.1093/bioinformatics/btl574. Epub 2006 Dec 5. Bioinformatics. 2007. PMID: 17148510 - Statistical software for gene mapping by admixture linkage disequilibrium.
Montana G, Hoggart C. Montana G, et al. Brief Bioinform. 2007 Nov;8(6):393-5. doi: 10.1093/bib/bbm035. Epub 2007 Jul 18. Brief Bioinform. 2007. PMID: 17640923 Review. - Comparative analysis of haplotype association mapping algorithms.
McClurg P, Pletcher MT, Wiltshire T, Su AI. McClurg P, et al. BMC Bioinformatics. 2006 Feb 9;7:61. doi: 10.1186/1471-2105-7-61. BMC Bioinformatics. 2006. PMID: 16466585 Free PMC article. - Association genetics of complex traits in conifers.
Neale DB, Savolainen O. Neale DB, et al. Trends Plant Sci. 2004 Jul;9(7):325-30. doi: 10.1016/j.tplants.2004.05.006. Trends Plant Sci. 2004. PMID: 15231277 Review.
Cited by
- HybridQC: A SNP-Based Quality Control Application for Rapid Hybridity Verification in Diploid Plants.
Ongom PO, Ajibade YA, Mohammed SB, Dieng I, Fatokun C, Boukar O. Ongom PO, et al. Genes (Basel). 2024 Sep 26;15(10):1252. doi: 10.3390/genes15101252. Genes (Basel). 2024. PMID: 39457376 Free PMC article. - Identification of novel genetic factors underlying the host-pathogen interaction between barley (Hordeum vulgare L.) and powdery mildew (Blumeria graminis f. sp. hordei).
Pogoda M, Liu F, Douchkov D, Djamei A, Reif JC, Schweizer P, Schulthess AW. Pogoda M, et al. PLoS One. 2020 Jul 2;15(7):e0235565. doi: 10.1371/journal.pone.0235565. eCollection 2020. PLoS One. 2020. PMID: 32614894 Free PMC article. - Genomic and Molecular Identification of Genes Contributing to the Caspofungin Paradoxical Effect in Aspergillus fumigatus.
Zhao S, Martin-Vicente A, Colabardini AC, Pereira Silva L, Rinker DC, Fortwendel JR, Goldman GH, Gibbons JG. Zhao S, et al. Microbiol Spectr. 2022 Oct 26;10(5):e0051922. doi: 10.1128/spectrum.00519-22. Epub 2022 Sep 12. Microbiol Spectr. 2022. PMID: 36094204 Free PMC article. - Genome-wide association analysis of tan spot disease resistance in durum wheat accessions from Tunisia.
Laribi M, Fredua-Agyeman R, Ben M'Barek S, Sansaloni CP, Dreisigacker S, Gamba FM, Abdedayem W, Nefzaoui M, Araar C, Hwang SF, Yahyaoui AH, Strelkov SE. Laribi M, et al. Front Genet. 2023 Oct 25;14:1231027. doi: 10.3389/fgene.2023.1231027. eCollection 2023. Front Genet. 2023. PMID: 37946749 Free PMC article.
Publication types
MeSH terms
LinkOut - more resources
Full Text Sources
Other Literature Sources
Molecular Biology Databases