Phylogeny of Zika Virus in Western Hemisphere, 2015 - PubMed (original) (raw)

Phylogeny of Zika Virus in Western Hemisphere, 2015

Robert S Lanciotti et al. Emerg Infect Dis. 2016 May.

No abstract available

Keywords: Guatemala; New World; Puerto Rico; Western Hemisphere; Zika virus; flavivirus; phylogeny; viruses.

PubMed Disclaimer

Figures

Figure

Phylogenetic tree of Zika virus isolates identified from Guatemala and Puerto Rico in December 2015 (indicated in boldface) compared with reference isolates obtained from GenBank. The isolates from Guatemala and Puerto Rico grouped with other Asian genotype viruses. The tree was derived by neighbor-joining methods (bootstrapped 1,000 times) using complete-genome sequences. Location, year identified, and GenBank strain identification for the viruses used in tree construction are shown. Scale bar indicates number of nucleotide substitutions per site. GenBank accession nos.: KU321639 (Brazil 2015 SPH2015), KJ776791 (French Polynesia H/PF/2013), KF383115 (Central African Republic ARB1362), KF383116 (Senegal 1968 ArD7117), KF383117 (Senegal 1997 ArD128000), KF383118 (Senegal 2001 ArD157995), KF383119 (Senegal 2001 ArD158084), KF268948 (CAR 1979 ARB13565), KF268949 (CAR 1980 ARB15076), KF268950 (CAR 1976 ARB7701), EU545988 (Yap 2007), KF993678 (Thailand 2013 PLCal_ZV), JN860885 (Cambodia 2010 FSS13025), HQ234499 (Malaysia 1966 P6-740), HQ234501 (Senegal 1984 ArD41519), HQ234500 (Nigeria 1968 IbH 30656), LC002520 (Uganda 1947 MR766), KU501215 (Puerto Rico PRVABC59), KU501216 (Guatemala 8375), and KU501217 (Guatemala 103344).

Similar articles

• Zika virus, French polynesia, South pacific, 2013.
  Cao-Lormeau VM, Roche C, Teissier A, Robin E, Berry AL, Mallet HP, Sall AA, Musso D. Cao-Lormeau VM, et al. Emerg Infect Dis. 2014 Jun;20(6):1085-6. doi: 10.3201/eid2006.140138. Emerg Infect Dis. 2014. PMID: 24856001 Free PMC article. No abstract available.
• Distinct Zika Virus Lineage in Salvador, Bahia, Brazil.
  Naccache SN, Thézé J, Sardi SI, Somasekar S, Greninger AL, Bandeira AC, Campos GS, Tauro LB, Faria NR, Pybus OG, Chiu CY. Naccache SN, et al. Emerg Infect Dis. 2016 Oct;22(10):1788-92. doi: 10.3201/eid2210.160663. Epub 2016 Oct 15. Emerg Infect Dis. 2016. PMID: 27448188 Free PMC article.
• Increasing genetic diversity of Zika virus in the Latin American outbreak.
  Shi W, Zhang Z, Ling C, Carr MJ, Tong Y, Gao GF. Shi W, et al. Emerg Microbes Infect. 2016 Jul 6;5(7):e68. doi: 10.1038/emi.2016.68. Emerg Microbes Infect. 2016. PMID: 27381219 Free PMC article. No abstract available.
• Zika virus in Thailand.
  Khongwichit S, Wikan N, Auewarakul P, Smith DR. Khongwichit S, et al. Microbes Infect. 2018 Dec;20(11-12):670-675. doi: 10.1016/j.micinf.2018.01.007. Epub 2018 Mar 2. Microbes Infect. 2018. PMID: 29477878 Review.
• Differential virulence between Asian and African lineages of Zika virus.
  Simonin Y, van Riel D, Van de Perre P, Rockx B, Salinas S. Simonin Y, et al. PLoS Negl Trop Dis. 2017 Sep 21;11(9):e0005821. doi: 10.1371/journal.pntd.0005821. eCollection 2017 Sep. PLoS Negl Trop Dis. 2017. PMID: 28934211 Free PMC article. Review. No abstract available.

Cited by

• Genome-wide CRISPR screen for Zika virus resistance in human neural cells.
  Li Y, Muffat J, Omer Javed A, Keys HR, Lungjangwa T, Bosch I, Khan M, Virgilio MC, Gehrke L, Sabatini DM, Jaenisch R. Li Y, et al. Proc Natl Acad Sci U S A. 2019 May 7;116(19):9527-9532. doi: 10.1073/pnas.1900867116. Epub 2019 Apr 24. Proc Natl Acad Sci U S A. 2019. PMID: 31019072 Free PMC article.
• Comparative overview of emerging RNA viruses: Epidemiology, pathogenesis, diagnosis and current treatment.
  Chakrabartty I, Khan M, Mahanta S, Chopra H, Dhawan M, Choudhary OP, Bibi S, Mohanta YK, Emran TB. Chakrabartty I, et al. Ann Med Surg (Lond). 2022 Jul;79:103985. doi: 10.1016/j.amsu.2022.103985. Epub 2022 Jun 11. Ann Med Surg (Lond). 2022. PMID: 35721786 Free PMC article. Review.
• Variation in competence for ZIKV transmission by Aedes aegypti and Aedes albopictus in Mexico.
  Garcia-Luna SM, Weger-Lucarelli J, Rückert C, Murrieta RA, Young MC, Byas AD, Fauver JR, Perera R, Flores-Suarez AE, Ponce-Garcia G, Rodriguez AD, Ebel GD, Black WC 4th. Garcia-Luna SM, et al. PLoS Negl Trop Dis. 2018 Jul 2;12(7):e0006599. doi: 10.1371/journal.pntd.0006599. eCollection 2018 Jul. PLoS Negl Trop Dis. 2018. PMID: 29965958 Free PMC article.
• Live neighbor-joining.
  Telles GP, Araújo GS, Walter MEMT, Brigido MM, Almeida NF. Telles GP, et al. BMC Bioinformatics. 2018 May 16;19(1):172. doi: 10.1186/s12859-018-2162-x. BMC Bioinformatics. 2018. PMID: 29769032 Free PMC article.
• The molecular tweezer CLR01 inhibits Ebola and Zika virus infection.
  Röcker AE, Müller JA, Dietzel E, Harms M, Krüger F, Heid C, Sowislok A, Riber CF, Kupke A, Lippold S, von Einem J, Beer J, Knöll B, Becker S, Schmidt-Chanasit J, Otto M, Vapalahti O, Zelikin AN, Bitan G, Schrader T, Münch J. Röcker AE, et al. Antiviral Res. 2018 Apr;152:26-35. doi: 10.1016/j.antiviral.2018.02.003. Epub 2018 Feb 8. Antiviral Res. 2018. PMID: 29428508 Free PMC article.

References

1. 1. Dick GW, Kitchen SF, Haddow AJ. Zika virus isolations and serological specificity. Trans R Soc Trop Med Hyg. 1952;46:509–20 . 10.1016/0035-9203(52)90042-4 - DOI - PubMed
2. 1. Lanciotti RS, Kosoy OL, Laven JJ, Velez JO, Lambert AJ, Johnson AJ, et al. Genetic and serologic properties of Zika virus associated with an epidemic, Yap State, Micronesia, 2007. Emerg Infect Dis. 2008;14:1232–9. 10.3201/eid1408.080287 - DOI - PMC - PubMed
3. 1. Cao-Lormeau VM, Roche C, Teissier A, Robin E, Berry AL, Mallet HP, et al. Zika virus, French Polynesia, South Pacific, 2013. Emerg Infect Dis. 2014;20:1085–6. 10.3201/eid2011.141380 - DOI - PMC - PubMed
4. 1. Musso D, Nilles EJ, Cao-Lormeau VM. Rapid spread of emerging Zika virus in the Pacific area. Clin Microbiol Infect. 2014;20:O595–6. 10.1111/1469-0691.12707 - DOI - PubMed
5. 1. Faye O, Freire CC, Iamarino A, Faye O, de Oliveira JV, Diallo M, et al. Molecular evolution of Zika virus during its emergence in the 20th century. PLoS Negl Trop Dis. 2014;8:e2636 . 10.1371/journal.pntd.0002636 - DOI - PMC - PubMed

Publication types

MeSH terms

LinkOut - more resources

• Full Text Sources

  • CDC-NCEZID
  • Europe PubMed Central
  • PubMed Central

• Other Literature Sources

  • The Lens - Patent Citations Database
  • scite Smart Citations

• Medical

  • MedlinePlus Health Information