Maize PeptideAtlas (original) (raw)

Publications

• The Zea mays PeptideAtlas: A New Maize Community Resource
  Klaas J. van Wijk, Tami Leppert, Zhi Sun, Isabell Guzchenko, Erica Debley, Georgia Sauermann, Pratyush Routray, Luis Mendoza, Qi Sun, and Eric W. Deutsch
  Journal of Proteome Research Article ASAP
  DOI: 10.1021/acs.jproteome.4c00320
  [ bioRxiv preprint ]

Download

Below are individual Zea mays PeptideAtlas builds available for download in various flat file formats. Note that not all files contain all information from the build. A build subtitled "PSM FDR=0.002" denotes a PSM FDR threshold of 0.002 (0.2%) is applied to every sample in the build.

Maize 2023-09 PSM FDR = 0.00008Latest Build

• Database tables exported as TSV dump file [348MB]
• Database tables exported as mysql dump file [325MB]
• Peptide CDS and chromosomal coordinates [752MB]
• Peptide CDS coordinates [471MB]
• Peptide sequences in FASTA format [10MB]
• Spectral library (HR-HCD) [501MB]
• Spectral library (HR-QTOF) [158MB]
• Spectral library (LR-HCD) [93MB]
• Spectral library (TMT_HR-HCD) [653MB]
• Spectral library (TMT_LR-IT-CID) [5MB]
• Spectral library (iTRAQ_HR-HCD) [496MB]
• Spectral library (iTRAQ_HR-QTOF) [113MB]

Help

Complete description of each of the available download formats