ClusterFoldSimilarity (development version) (original) (raw)

This is the development version of ClusterFoldSimilarity; for the stable release version, seeClusterFoldSimilarity.

Calculate similarity of clusters from different single cell samples using foldchanges

Bioconductor version: Development (3.22)

This package calculates a similarity coefficient using the fold changes of shared features (e.g. genes) among clusters of different samples/batches/datasets. The similarity coefficient is calculated using the dot-product (Hadamard product) of every pairwise combination of Fold Changes between a source cluster i of sample/dataset n and all the target clusters j in sample/dataset m

Author: Oscar Gonzalez-Velasco [cre, aut] ORCID: 0000-0002-5054-8635

Maintainer: Oscar Gonzalez-Velasco

Citation (from within R, enter citation("ClusterFoldSimilarity")):

Installation

To install this package, start R (version "4.5") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ClusterFoldSimilarity")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ClusterFoldSimilarity")

Details

See More

Package Archives

Follow Installation instructions to use this package in your R session.