CB2: CRISPR Pooled Screen Analysis using Beta-Binomial Test (original) (raw)
Provides functions for hit gene identification and quantification of sgRNA (single-guided RNA) abundances for CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) pooled screen data analysis. Details are in Jeong et al. (2019) <doi:10.1101/gr.245571.118> and Baggerly et al. (2003) <doi:10.1093/bioinformatics/btg173>.
| Version: | 1.3.4 |
|---|---|
| Depends: | R (≥ 3.5.0) |
| Imports: | Rcpp (≥ 0.12.16), metap, magrittr, dplyr, tibble, stringr, ggplot2, tidyr, glue, pheatmap, tools, readr, parallel, R.utils |
| LinkingTo: | Rcpp, RcppArmadillo |
| Suggests: | testthat, knitr, rmarkdown |
| Published: | 2020-07-24 |
| DOI: | 10.32614/CRAN.package.CB2 |
| Author: | Hyun-Hwan Jeong [aut, cre] |
| Maintainer: | Hyun-Hwan Jeong <jeong.hyunhwan at gmail.com> |
| License: | MIT + file |
| NeedsCompilation: | yes |
| Materials: | README |
| In views: | Omics |
| CRAN checks: | CB2 results |
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