ComICS: Computational Methods for Immune Cell-Type Subsets (original) (raw)
Provided are Computational methods for Immune Cell-type Subsets, including:(1) DCQ (Digital Cell Quantifier) to infer global dynamic changes in immune cell quantities within a complex tissue; and (2) VoCAL (Variation of Cell-type Abundance Loci) a deconvolution-based method that utilizes transcriptome data to infer the quantities of immune-cell types, and then uses these quantitative traits to uncover the underlying DNA loci.
| Version: | 1.0.4 |
|---|---|
| Depends: | R (≥ 3.1.1) |
| Imports: | glmnet, stats |
| Published: | 2018-05-13 |
| DOI: | 10.32614/CRAN.package.ComICS |
| Author: | Yael Steuerman [aut, cre], Irit Gat-Viks [aut] |
| Maintainer: | Yael Steuerman |
| License: | GPL-2 |
| URL: | http://dcq.tau.ac.il/ , http://csgi.tau.ac.il/VoCAL/ |
| NeedsCompilation: | no |
| CRAN checks: | ComICS results |
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