CytoSimplex: Simplex Visualization of Cell Fate Similarity in Single-Cell Data (original) (raw)
Create simplex plots to visualize the similarity between single-cells and selected clusters in a 1-/2-/3-simplex space. Velocity information can be added as an additional layer. See Liu J, Wang Y et al (2023) <doi:10.1093/bioinformatics/btaf119> for more details.
Version:
0.2.0
Depends:
stats, methods, grDevices, R (≥ 3.6)
Imports:
cli, ggplot2, Matrix, plot3D, plotly, RColorBrewer, Rcpp, rlang, viridis
LinkingTo:
Suggests:
hdf5r, knitr, magick, patchwork, rmarkdown, Seurat, SeuratObject, SingleCellExperiment, SummarizedExperiment, testthat (≥ 3.0.0)
Published:
2025-04-23
DOI:
10.32614/CRAN.package.CytoSimplex
Author:
Yichen Wang 
[aut, cre], Jialin Liu [aut], Joshua Welch [cph]
Maintainer:
Yichen Wang
License:
URL:
https://welch-lab.github.io/CytoSimplex/,https://github.com/welch-lab/CytoSimplex
NeedsCompilation:
yes
Materials:
CRAN checks: