doi:10.1093/nar/gkac1000> - Winter (2017) <doi:10.32614/RJ-2017-066>.">

DeSciDe: Tool for Unbiased Literature Searching and Gene List Curation (original) (raw)

Designed for genomic and proteomic data analysis, enabling unbiased PubMed searching, protein interaction network visualization, and comprehensive data summarization. This package aims to help users identify novel targets within their data sets based on protein network interactions and publication precedence of target's association with research context based on literature precedence. Methods in this package are described in detail in: Douglas (Year) . Key functionalities of this package also leverage methodologies from previous works, such as: - Szklarczyk et al. (2023) <doi:10.1093/nar/gkac1000> - Winter (2017) <doi:10.32614/RJ-2017-066>.

Version: 1.0.2
Depends: R (≥ 4.0.0)
Imports: rentrez, ComplexHeatmap, circlize, STRINGdb, data.table, igraph, ggplot2, openxlsx, dplyr, tidyr, magrittr, tibble, ggrepel
Suggests: testthat (≥ 3.0.0), knitr, rmarkdown, withr
Published: 2025-08-31
DOI: 10.32614/CRAN.package.DeSciDe
Author: Cameron Douglas ORCID iD [aut, cre]
Maintainer: Cameron Douglas
BugReports: https://github.com/camdouglas/DeSciDe/issues
License: MIT + file
URL: https://github.com/camdouglas/DeSciDe
NeedsCompilation: no
Materials: README
CRAN checks: DeSciDe results [issues need fixing before 2025-12-01]

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